CRAN Package Check Results for Package GWAF

Last updated on 2015-07-04 23:47:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2 4.32 61.02 65.34 NOTE
r-devel-linux-x86_64-debian-gcc 2.2 4.18 59.51 63.69 NOTE
r-devel-linux-x86_64-fedora-clang 2.2 125.79 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2 122.43 NOTE
r-devel-osx-x86_64-clang 2.2 105.15 OK
r-devel-windows-ix86+x86_64 2.2 13.00 81.00 94.00 NOTE
r-patched-linux-x86_64 2.2 4.44 57.05 61.50 OK
r-patched-solaris-sparc 2.2 747.00 OK
r-patched-solaris-x86 2.2 162.10 OK
r-release-linux-x86_64 2.2 4.23 57.06 61.29 OK
r-release-osx-x86_64-mavericks 2.2 OK
r-release-windows-ix86+x86_64 2.2 16.00 80.00 96.00 OK
r-oldrel-windows-ix86+x86_64 2.2 22.00 105.00 127.00 OK

Check Details

Version: 2.2
Check: R code for possible problems
Result: NOTE
    GWplot: no visible global function definition for ‘bitmap’
    GWplot: no visible global function definition for ‘par’
    GWplot: no visible global function definition for ‘write.table’
    GWplot: no visible binding for global variable ‘median’
    GWplot: no visible global function definition for ‘plot’
    GWplot: no visible global function definition for ‘axis’
    GWplot: no visible global function definition for ‘points’
    GWplot: no visible global function definition for ‘abline’
    GWplot: no visible global function definition for ‘dev.off’
    auto: no visible global function definition for ‘read.table’
    geepack.lgst: no visible global function definition for ‘na.omit’
    geepack.lgst : cor.snp: no visible global function definition for ‘sd’
    geepack.lgst : cor.snp: no visible global function definition for ‘cor’
    geepack.lgst: no visible global function definition for ‘fisher.test’
    geepack.lgst: no visible global function definition for ‘chisq.test’
    geepack.lgst: no visible global function definition for ‘as.formula’
    geepack.lgst: no visible global function definition for ‘glm’
    geepack.lgst: no visible binding for global variable ‘na.omit’
    geepack.lgst: no visible global function definition for ‘pchisq’
    geepack.lgst.batch : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.lgst.batch: no visible global function definition for ‘na.omit’
    geepack.lgst.batch: no visible global function definition for ‘var’
    geepack.lgst.batch: no visible binding for global variable ‘var’
    geepack.lgst.batch: no visible global function definition for ‘cor’
    geepack.lgst.batch: no visible global function definition for
     ‘write.table’
    geepack.lgst.batch.imputed : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.lgst.batch.imputed: no visible global function definition for
     ‘na.omit’
    geepack.lgst.batch.imputed: no visible global function definition for
     ‘var’
    geepack.lgst.batch.imputed: no visible binding for global variable
     ‘var’
    geepack.lgst.batch.imputed: no visible global function definition for
     ‘cor’
    geepack.lgst.batch.imputed: no visible global function definition for
     ‘write.table’
    geepack.lgst.imputed: no visible global function definition for
     ‘na.omit’
    geepack.lgst.imputed : cor.snp: no visible global function definition
     for ‘sd’
    geepack.lgst.imputed : cor.snp: no visible global function definition
     for ‘cor’
    geepack.lgst.imputed: no visible global function definition for
     ‘chisq.test’
    geepack.lgst.imputed: no visible global function definition for
     ‘as.formula’
    geepack.lgst.imputed: no visible global function definition for ‘glm’
    geepack.lgst.imputed: no visible binding for global variable ‘na.omit’
    geepack.lgst.imputed: no visible global function definition for
     ‘pchisq’
    geepack.lgst.int: no visible global function definition for ‘na.omit’
    geepack.lgst.int : cor.snp: no visible global function definition for
     ‘sd’
    geepack.lgst.int : cor.snp: no visible global function definition for
     ‘cor’
    geepack.lgst.int: no visible global function definition for ‘cor’
    geepack.lgst.int: no visible global function definition for
     ‘chisq.test’
    geepack.lgst.int: no visible global function definition for ‘glm’
    geepack.lgst.int: no visible global function definition for ‘pchisq’
    geepack.lgst.int.batch : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.lgst.int.batch: no visible global function definition for
     ‘na.omit’
    geepack.lgst.int.batch: no visible global function definition for ‘var’
    geepack.lgst.int.batch: no visible binding for global variable ‘var’
    geepack.lgst.int.batch: no visible global function definition for ‘cor’
    geepack.lgst.int.batch: no visible global function definition for
     ‘write.table’
    geepack.lgst.int.batch.imputed : read.in.data: no visible global
     function definition for ‘read.table’
    geepack.lgst.int.batch.imputed: no visible global function definition
     for ‘na.omit’
    geepack.lgst.int.batch.imputed: no visible global function definition
     for ‘var’
    geepack.lgst.int.batch.imputed: no visible binding for global variable
     ‘var’
    geepack.lgst.int.batch.imputed: no visible global function definition
     for ‘cor’
    geepack.lgst.int.batch.imputed: no visible global function definition
     for ‘write.table’
    geepack.lgst.int.imputed: no visible global function definition for
     ‘var’
    geepack.lgst.int.imputed: no visible binding for global variable ‘var’
    geepack.lgst.int.imputed: no visible global function definition for
     ‘na.omit’
    geepack.lgst.int.imputed : cor.snp: no visible global function
     definition for ‘sd’
    geepack.lgst.int.imputed : cor.snp: no visible global function
     definition for ‘cor’
    geepack.lgst.int.imputed: no visible global function definition for
     ‘cor’
    geepack.lgst.int.imputed: no visible global function definition for
     ‘glm’
    geepack.lgst.int.imputed: no visible global function definition for
     ‘pchisq’
    geepack.quant.batch : cor.snp: no visible global function definition
     for ‘sd’
    geepack.quant.batch : cor.snp: no visible global function definition
     for ‘cor’
    geepack.quant.batch : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.quant.batch: no visible global function definition for
     ‘na.omit’
    geepack.quant.batch: no visible global function definition for ‘var’
    geepack.quant.batch: no visible binding for global variable ‘var’
    geepack.quant.batch: no visible global function definition for ‘cor’
    geepack.quant.batch: no visible global function definition for ‘pchisq’
    geepack.quant.batch: no visible global function definition for
     ‘write.table’
    geepack.quant.batch.imputed : cor.snp: no visible global function
     definition for ‘sd’
    geepack.quant.batch.imputed : cor.snp: no visible global function
     definition for ‘cor’
    geepack.quant.batch.imputed : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.quant.batch.imputed: no visible global function definition for
     ‘na.omit’
    geepack.quant.batch.imputed: no visible global function definition for
     ‘var’
    geepack.quant.batch.imputed: no visible binding for global variable
     ‘var’
    geepack.quant.batch.imputed: no visible global function definition for
     ‘cor’
    geepack.quant.batch.imputed: no visible global function definition for
     ‘pchisq’
    geepack.quant.batch.imputed: no visible global function definition for
     ‘write.table’
    geepack.quant.int.batch : cor.snp: no visible global function
     definition for ‘sd’
    geepack.quant.int.batch : cor.snp: no visible global function
     definition for ‘cor’
    geepack.quant.int.batch : read.in.data: no visible global function
     definition for ‘read.table’
    geepack.quant.int.batch: no visible global function definition for
     ‘na.omit’
    geepack.quant.int.batch: no visible global function definition for
     ‘pchisq’
    geepack.quant.int.batch: no visible global function definition for
     ‘write.table’
    geepack.quant.int.batch.imputed : cor.snp: no visible global function
     definition for ‘sd’
    geepack.quant.int.batch.imputed : cor.snp: no visible global function
     definition for ‘cor’
    geepack.quant.int.batch.imputed : read.in.data: no visible global
     function definition for ‘read.table’
    geepack.quant.int.batch.imputed: no visible global function definition
     for ‘na.omit’
    geepack.quant.int.batch.imputed: no visible global function definition
     for ‘pchisq’
    geepack.quant.int.batch.imputed: no visible global function definition
     for ‘write.table’
    glmm.lgst: no visible global function definition for ‘na.omit’
    glmm.lgst : cor.snp: no visible global function definition for ‘sd’
    glmm.lgst : cor.snp: no visible global function definition for ‘cor’
    glmm.lgst: no visible global function definition for ‘fisher.test’
    glmm.lgst: no visible global function definition for ‘chisq.test’
    glmm.lgst: no visible global function definition for ‘coef’
    glmm.lgst: no visible global function definition for ‘pchisq’
    glmm.lgst: no visible global function definition for ‘vcov’
    glmm.lgst.batch : read.in.data: no visible global function definition
     for ‘read.table’
    glmm.lgst.batch: no visible global function definition for ‘na.omit’
    glmm.lgst.batch: no visible global function definition for ‘var’
    glmm.lgst.batch: no visible binding for global variable ‘var’
    glmm.lgst.batch: no visible global function definition for ‘cor’
    glmm.lgst.batch: no visible global function definition for
     ‘write.table’
    lmeVpack.batch.imputed : cor.snp: no visible global function definition
     for ‘sd’
    lmeVpack.batch.imputed : cor.snp: no visible global function definition
     for ‘cor’
    lmeVpack.batch.imputed : read.in.data: no visible global function
     definition for ‘read.table’
    lmeVpack.batch.imputed: no visible global function definition for
     ‘na.omit’
    lmeVpack.batch.imputed: no visible global function definition for ‘var’
    lmeVpack.batch.imputed: no visible binding for global variable ‘var’
    lmeVpack.batch.imputed: no visible global function definition for ‘cor’
    lmeVpack.batch.imputed: no visible binding for global variable
     ‘na.omit’
    lmeVpack.batch.imputed: no visible global function definition for
     ‘pchisq’
    lmeVpack.batch.imputed: no visible global function definition for
     ‘write.table’
    lmepack.batch : cor.snp: no visible global function definition for ‘sd’
    lmepack.batch : cor.snp: no visible global function definition for
     ‘cor’
    lmepack.batch : read.in.data: no visible global function definition for
     ‘read.table’
    lmepack.batch: no visible global function definition for ‘na.omit’
    lmepack.batch: no visible global function definition for ‘var’
    lmepack.batch: no visible binding for global variable ‘var’
    lmepack.batch: no visible global function definition for ‘cor’
    lmepack.batch: no visible binding for global variable ‘na.omit’
    lmepack.batch: no visible global function definition for ‘pchisq’
    lmepack.batch: no visible global function definition for ‘write.table’
    lmepack.batch.imputed : cor.snp: no visible global function definition
     for ‘sd’
    lmepack.batch.imputed : cor.snp: no visible global function definition
     for ‘cor’
    lmepack.batch.imputed : read.in.data: no visible global function
     definition for ‘read.table’
    lmepack.batch.imputed: no visible global function definition for
     ‘na.omit’
    lmepack.batch.imputed: no visible global function definition for ‘var’
    lmepack.batch.imputed: no visible binding for global variable ‘var’
    lmepack.batch.imputed: no visible global function definition for ‘cor’
    lmepack.batch.imputed: no visible binding for global variable ‘na.omit’
    lmepack.batch.imputed: no visible global function definition for
     ‘pchisq’
    lmepack.batch.imputed: no visible global function definition for
     ‘write.table’
    lmepack.int.batch : cor.snp: no visible global function definition for
     ‘sd’
    lmepack.int.batch : cor.snp: no visible global function definition for
     ‘cor’
    lmepack.int.batch : read.in.data: no visible global function definition
     for ‘read.table’
    lmepack.int.batch: no visible global function definition for ‘na.omit’
    lmepack.int.batch: no visible binding for global variable ‘na.omit’
    lmepack.int.batch: no visible global function definition for ‘pchisq’
    lmepack.int.batch: no visible global function definition for
     ‘write.table’
    lmepack.int.batch.imputed : cor.snp: no visible global function
     definition for ‘sd’
    lmepack.int.batch.imputed : cor.snp: no visible global function
     definition for ‘cor’
    lmepack.int.batch.imputed : read.in.data: no visible global function
     definition for ‘read.table’
    lmepack.int.batch.imputed: no visible global function definition for
     ‘na.omit’
    lmepack.int.batch.imputed: no visible binding for global variable
     ‘na.omit’
    lmepack.int.batch.imputed: no visible global function definition for
     ‘pchisq’
    lmepack.int.batch.imputed: no visible global function definition for
     ‘write.table’
    qq: no visible global function definition for ‘bitmap’
    qq: no visible global function definition for ‘na.omit’
    qq: no visible global function definition for ‘median’
    qq: no visible global function definition for ‘qchisq’
    qq: no visible global function definition for ‘par’
    qq: no visible global function definition for ‘qqplot’
    qq: no visible global function definition for ‘abline’
    qq: no visible global function definition for ‘text’
    qq: no visible global function definition for ‘dev.off’
    Undefined global functions or variables:
     abline as.formula axis bitmap chisq.test coef cor dev.off fisher.test
     glm median na.omit par pchisq plot points qchisq qqplot read.table sd
     text var vcov write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64