CRAN Package Check Results for Package GeneticTools

Last updated on 2016-12-09 11:48:58.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.1 22.42 44.32 66.74 WARN
r-devel-linux-x86_64-debian-gcc 0.3.1 19.63 45.09 64.72 WARN
r-devel-linux-x86_64-fedora-clang 0.3.1 147.98 WARN --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.3.1 142.63 WARN --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.3.1 111.60 WARN
r-devel-windows-ix86+x86_64 0.3.1 56.00 131.00 187.00 WARN
r-patched-linux-x86_64 0.3.1 16.31 41.06 57.37 NOTE
r-patched-solaris-sparc 0.3.1 730.20 NOTE
r-patched-solaris-x86 0.3.1 150.50 NOTE
r-release-linux-x86_64 0.3.1 16.23 41.35 57.58 NOTE
r-release-osx-x86_64-mavericks 0.3.1 NOTE
r-release-windows-ix86+x86_64 0.3.1 50.00 137.00 187.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3.1 69.00 107.00 176.00 OK

Check Details

Version: 0.3.1
Check: R code for possible problems
Result: NOTE
    calcDistances.Splines: no visible global function definition for
     ‘smooth.spline’
    calcDistances.Splines: no visible global function definition for
     ‘predict’
    eQTL: no visible global function definition for ‘as’
    eqtlLM: no visible global function definition for ‘lm’
    genotypePlot: no visible global function definition for ‘boxplot’
    genotypePlot: no visible global function definition for ‘axis’
    plot.eqtl: no visible global function definition for ‘par’
    plot.mdr: no visible global function definition for ‘density’
    plotGeneLocation: no visible global function definition for ‘rect’
    plotGeneLocation: no visible global function definition for ‘text’
    plotGeneLocation: no visible global function definition for ‘axis’
    plotGeneLocation: no visible global function definition for ‘lines’
    plotIt: no visible global function definition for ‘axis’
    plotIt: no visible global function definition for ‘lines’
    plotIt: no visible global function definition for ‘par’
    plotIt: no visible global function definition for ‘points’
    plotSingle.eqtl: no visible global function definition for ‘pdf’
    plotSingle.eqtl: no visible global function definition for ‘dev.off’
    visTrans: no visible global function definition for ‘rainbow’
    visTrans: no visible global function definition for ‘layout’
    visTrans: no visible global function definition for ‘par’
    Undefined global functions or variables:
     as axis boxplot density dev.off layout lines lm par pdf points
     predict rainbow rect smooth.spline text
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "rainbow")
     importFrom("graphics", "axis", "boxplot", "layout", "lines", "par",
     "points", "rect", "text")
     importFrom("methods", "as")
     importFrom("stats", "density", "lm", "predict", "smooth.spline")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.3.1
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory but no files in 'inst/doc':
     ‘GeneticTools.pdf’, ‘GeneticTools.tex’
    Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.3.1
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    calcDistances.Splines: no visible global function definition for
     ‘smooth.spline’
    calcDistances.Splines: no visible global function definition for
     ‘predict’
    eQTL: no visible global function definition for ‘as’
    eqtlLM: no visible global function definition for ‘lm’
    genotypePlot: no visible global function definition for ‘boxplot’
    genotypePlot: no visible global function definition for ‘axis’
    plot.eqtl: no visible global function definition for ‘par’
    plot.mdr: no visible global function definition for ‘density’
    plotGeneLocation: no visible global function definition for ‘rect’
    plotGeneLocation: no visible global function definition for ‘text’
    plotGeneLocation: no visible global function definition for ‘axis’
    plotGeneLocation: no visible global function definition for ‘lines’
    plotIt: no visible global function definition for ‘axis’
    plotIt: no visible global function definition for ‘lines’
    plotIt: no visible global function definition for ‘par’
    plotIt: no visible global function definition for ‘points’
    plotSingle.eqtl: no visible global function definition for ‘pdf’
    plotSingle.eqtl: no visible global function definition for ‘dev.off’
    visTrans: no visible global function definition for ‘rainbow’
    visTrans: no visible global function definition for ‘layout’
    visTrans: no visible global function definition for ‘par’
    Undefined global functions or variables:
     as axis boxplot density dev.off layout lines lm par pdf points
     predict rainbow rect smooth.spline text
    Consider adding
     importFrom("grDevices", "dev.off", "pdf", "rainbow")
     importFrom("graphics", "axis", "boxplot", "layout", "lines", "par",
     "points", "rect", "text")
     importFrom("methods", "as")
     importFrom("stats", "density", "lm", "predict", "smooth.spline")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.1
Flags: --no-stop-on-test-error
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory but no files in 'inst/doc':
     ‘GeneticTools.pdf’, ‘GeneticTools.tex’
    Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc