CRAN Package Check Results for Package GeoLight

Last updated on 2015-08-28 12:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.03 1.00 17.30 18.30 ERROR
r-devel-linux-x86_64-debian-gcc 1.03 1.00 16.95 17.96 ERROR
r-devel-linux-x86_64-fedora-clang 1.03 34.67 ERROR
r-devel-linux-x86_64-fedora-gcc 1.03 32.50 ERROR
r-devel-osx-x86_64-clang 1.03 38.71 ERROR
r-devel-windows-ix86+x86_64 1.03 6.00 34.00 40.00 ERROR
r-patched-linux-x86_64 1.03 1.09 18.05 19.14 ERROR
r-patched-solaris-sparc 1.03 197.20 ERROR
r-patched-solaris-x86 1.03 52.80 ERROR
r-release-linux-x86_64 1.03 1.24 19.25 20.49 ERROR
r-release-osx-x86_64-mavericks 1.03 NOTE
r-release-windows-ix86+x86_64 1.03 6.00 33.00 39.00 ERROR
r-oldrel-windows-ix86+x86_64 1.03 8.00 41.00 49.00 ERROR

Check Details

Version: 1.03
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘changepoint’ ‘maps’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03
Check: R code for possible problems
Result: NOTE
    HillEkstromCalib: no visible global function definition for ‘var’
    HillEkstromCalib: no visible global function definition for ‘na.omit’
    HillEkstromCalib: no visible global function definition for ‘layout’
    HillEkstromCalib: no visible global function definition for ‘par’
    HillEkstromCalib: no visible global function definition for ‘text’
    HillEkstromCalib: no visible global function definition for
     ‘grey.colors’
    HillEkstromCalib: no visible global function definition for ‘lines’
    HillEkstromCalib: no visible global function definition for ‘mtext’
    HillEkstromCalib: no visible global function definition for ‘abline’
    HillEkstromCalib: no visible global function definition for ‘points’
    HillEkstromCalib: no visible global function definition for ‘axis’
    HillEkstromCalib: no visible global function definition for ‘legend’
    changeLight: no visible global function definition for
     ‘binseg.mean.cusum’
    changeLight: no visible global function definition for ‘layout’
    changeLight: no visible global function definition for ‘par’
    changeLight: no visible global function definition for ‘axis’
    changeLight: no visible global function definition for ‘mtext’
    changeLight: no visible global function definition for ‘na.omit’
    changeLight: no visible global function definition for ‘lines’
    changeLight: no visible global function definition for ‘abline’
    changeLight: no visible global function definition for ‘rect’
    coord: no visible global function definition for ‘na.omit’
    getElevation: no visible global function definition for ‘median’
    getElevation: no visible global function definition for ‘layout’
    getElevation: no visible global function definition for ‘par’
    getElevation: no visible global function definition for ‘mtext’
    getElevation: no visible global function definition for ‘arrows’
    getElevation: no visible global function definition for ‘abline’
    getElevation: no visible global function definition for ‘legend’
    getElevation: no visible global function definition for ‘points’
    getElevation: no visible global function definition for ‘axis’
    gleTrans: no visible global function definition for ‘read.table’
    glfTrans: no visible global function definition for ‘read.table’
    i.get.outliers: no visible global function definition for ‘quantile’
    loessFilter: no visible global function definition for ‘predict’
    loessFilter: no visible global function definition for ‘loess’
    loessFilter: no visible global function definition for ‘residuals’
    loessFilter: no visible global function definition for ‘par’
    loessFilter: no visible global function definition for ‘lines’
    loessFilter: no visible global function definition for ‘points’
    loessFilter: no visible global function definition for ‘axis’
    loessFilter: no visible global function definition for ‘mtext’
    loessFilter: no visible global function definition for ‘legend’
    luxTrans: no visible global function definition for ‘read.table’
    siteMap: no visible global function definition for ‘par’
    siteMap: no visible global function definition for ‘map’
    siteMap: no visible global function definition for ‘mtext’
    siteMap: no visible global function definition for ‘map.axes’
    siteMap: no visible global function definition for ‘na.omit’
    siteMap: no visible global function definition for ‘chull’
    siteMap: no visible global function definition for ‘lines’
    siteMap: no visible global function definition for ‘legend’
    trip2kml: no visible global function definition for ‘rgb’
    trip2kml: no visible global function definition for ‘col2rgb’
    tripMap: no visible global function definition for ‘par’
    tripMap: no visible global function definition for ‘map’
    tripMap: no visible global function definition for ‘mtext’
    tripMap: no visible global function definition for ‘map.axes’
    tripMap: no visible global function definition for ‘points’
    tripMap: no visible global function definition for ‘lines’
    twilightCalc: no visible global function definition for ‘plot’
    twilightCalc: no visible global function definition for ‘abline’
    twilightCalc: no visible global function definition for ‘points’
    twilightCalc: no visible global function definition for ‘axis’
    twilightCalc: no visible global function definition for ‘legend’
    twilightCalc: no visible global function definition for ‘identify’
    twilightCalc: no visible global function definition for ‘graphics.off’
    Undefined global functions or variables:
     abline arrows axis binseg.mean.cusum chull col2rgb graphics.off
     grey.colors identify layout legend lines loess map map.axes median
     mtext na.omit par plot points predict quantile read.table rect
     residuals rgb text var
    Consider adding
     importFrom("grDevices", "chull", "col2rgb", "graphics.off",
     "grey.colors", "rgb")
     importFrom("graphics", "abline", "arrows", "axis", "identify",
     "layout", "legend", "lines", "mtext", "par", "plot",
     "points", "rect", "text")
     importFrom("stats", "loess", "median", "na.omit", "predict",
     "quantile", "residuals", "var")
     importFrom("utils", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.03
Check: Rd line widths
Result: NOTE
    Rd file 'changeLight.Rd':
     \usage lines wider than 90 characters:
     changeLight(tFirst,tSecond,type,quantile=0.6,rise.prob=NA,set.prob=NA,days=5,plot=TRUE,summary=TRUE)
    
    Rd file 'siteMap.Rd':
     \usage lines wider than 90 characters:
     xlim,ylim,xlab="Longitude",ylab="Latitude",lwd=1,lty=1,pch=1,cex=1,col,main,add=FALSE)
    
    Rd file 'trip2kml.Rd':
     \usage lines wider than 90 characters:
     trip2kml(file, tFirst, tSecond, type, degElevation, col.scheme="heat.colors", point.alpha=0.7, cex=1, line.col="goldenrod")
    
    Rd file 'twilightCalc.Rd':
     \usage lines wider than 90 characters:
     twilightCalc(datetime,light,LightThreshold=TRUE,preSelection=TRUE,maxLight=NULL,ask=TRUE,nsee=500,allTwilights=FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.03
Check: Rd cross-references
Result: WARN
    Missing link or links in documentation object 'changeLight.Rd':
     ‘binseg.mean.cusum’
    
    See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03
Check: examples
Result: ERROR
    Running examples in ‘GeoLight-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: HillEkstromCalib
    > ### Title: Hill-Ekstrom calibration
    > ### Aliases: HillEkstromCalib
    >
    > ### ** Examples
    >
    > data(hoopoe2)
    > attach(hoopoe2)
    > residency <- changeLight(tFirst,tSecond,type,rise.prob=0.1,set.prob=0.1,plot=FALSE,summary=FALSE)
    Error in changeLight(tFirst, tSecond, type, rise.prob = 0.1, set.prob = 0.1, :
     could not find function "binseg.mean.cusum"
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03
Check: R code for possible problems
Result: NOTE
    changeLight: no visible global function definition for
     ‘binseg.mean.cusum’
    siteMap: no visible global function definition for ‘map’
    siteMap: no visible global function definition for ‘map.axes’
    tripMap: no visible global function definition for ‘map’
    tripMap: no visible global function definition for ‘map.axes’
    Undefined global functions or variables:
     binseg.mean.cusum map map.axes
Flavor: r-devel-osx-x86_64-clang

Version: 1.03
Check: R code for possible problems
Result: NOTE
    changeLight: no visible global function definition for
     ‘binseg.mean.cusum’
    siteMap: no visible global function definition for ‘map’
    siteMap: no visible global function definition for ‘map.axes’
    tripMap: no visible global function definition for ‘map’
    tripMap: no visible global function definition for ‘map.axes’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64