CRAN Package Check Results for Package GriegSmith

Last updated on 2014-10-31 21:47:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 3.71 42.23 45.94 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 3.49 39.26 42.75 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 104.82 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 98.32 NOTE
r-devel-osx-x86_64-clang 1.0 88.05 NOTE
r-devel-windows-ix86+x86_64 1.0 10.00 59.00 69.00 NOTE
r-patched-linux-x86_64 1.0 3.81 40.99 44.80 NOTE
r-patched-solaris-sparc 1.0 569.90 NOTE
r-patched-solaris-x86 1.0 139.80 NOTE
r-release-linux-ix86 1.0 4.40 53.62 58.02 NOTE
r-release-linux-x86_64 1.0 4.37 42.39 46.76 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 10.00 64.00 74.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 11.00 67.00 78.00 NOTE

Check Details

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘R.css’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘spatstat’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    GriegSmith: no visible global function definition for ‘is.ppp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0
Check: Rd files
Result: NOTE
    prepare_Rd: GriegSmith.Rd:42-44: Dropping empty section \details
    prepare_Rd: GriegSmith.Rd:45-51: Dropping empty section \value
    prepare_Rd: GriegSmith.Rd:62-64: Dropping empty section \note
    prepare_Rd: GriegSmith.Rd:68-70: Dropping empty section \seealso
    prepare_Rd: addem.Rd:28-30: Dropping empty section \details
    prepare_Rd: addem.Rd:31-37: Dropping empty section \value
    prepare_Rd: addem.Rd:44-46: Dropping empty section \note
    prepare_Rd: addem.Rd:41-43: Dropping empty section \author
    prepare_Rd: addem.Rd:38-40: Dropping empty section \references
    prepare_Rd: addem.Rd:50-52: Dropping empty section \seealso
    prepare_Rd: belongtoint.Rd:28-30: Dropping empty section \details
    prepare_Rd: belongtoint.Rd:31-37: Dropping empty section \value
    prepare_Rd: belongtoint.Rd:44-46: Dropping empty section \note
    prepare_Rd: belongtoint.Rd:41-43: Dropping empty section \author
    prepare_Rd: belongtoint.Rd:38-40: Dropping empty section \references
    prepare_Rd: belongtoint.Rd:50-52: Dropping empty section \seealso
    prepare_Rd: envelopes.Rd:25-27: Dropping empty section \details
    prepare_Rd: envelopes.Rd:28-34: Dropping empty section \value
    prepare_Rd: envelopes.Rd:41-43: Dropping empty section \note
    prepare_Rd: envelopes.Rd:38-40: Dropping empty section \author
    prepare_Rd: envelopes.Rd:35-37: Dropping empty section \references
    prepare_Rd: envelopes.Rd:47-49: Dropping empty section \seealso
    prepare_Rd: iterate.Rd:22-24: Dropping empty section \details
    prepare_Rd: iterate.Rd:25-31: Dropping empty section \value
    prepare_Rd: iterate.Rd:38-40: Dropping empty section \note
    prepare_Rd: iterate.Rd:35-37: Dropping empty section \author
    prepare_Rd: iterate.Rd:32-34: Dropping empty section \references
    prepare_Rd: iterate.Rd:44-46: Dropping empty section \seealso
    prepare_Rd: sumofsquares.Rd:22-24: Dropping empty section \details
    prepare_Rd: sumofsquares.Rd:25-31: Dropping empty section \value
    prepare_Rd: sumofsquares.Rd:38-40: Dropping empty section \note
    prepare_Rd: sumofsquares.Rd:35-37: Dropping empty section \author
    prepare_Rd: sumofsquares.Rd:32-34: Dropping empty section \references
    prepare_Rd: sumofsquares.Rd:44-46: Dropping empty section \seealso
    prepare_Rd: sums.Rd:34-36: Dropping empty section \details
    prepare_Rd: sums.Rd:37-43: Dropping empty section \value
    prepare_Rd: sums.Rd:50-52: Dropping empty section \note
    prepare_Rd: sums.Rd:47-49: Dropping empty section \author
    prepare_Rd: sums.Rd:44-46: Dropping empty section \references
    prepare_Rd: sums.Rd:56-58: Dropping empty section \seealso
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'GriegSmith.Rd':
     \examples lines wider than 100 characters:
     if (max(datapoints[,1]) != max(datapoints[,2])) stop("Your count data must have equal dimensions")
    
    Rd file 'belongtoint.Rd':
     \examples lines wider than 100 characters:
     sum(vect[,1] >= xval & vect[,1] < (xval+int.x) & vect[,2] >= yval & vect[,2] < (yval+int.y));
    
    Rd file 'envelopes.Rd':
     \examples lines wider than 100 characters:
     perm<-matrix(sample(as.vector(countdata),size=2^(dimention*2),replace=FALSE),nrow=2^dimention,byrow=TRUE);
     ret.val<-cbind(apply(GSpermprev[,-1],1,quantile,probs=c(.05)),apply(GSpermprev[,-1],1,quantile,probs=c(.95)))
    
    Rd file 'sumofsquares.Rd':
     \examples lines wider than 100 characters:
     squaredsums<-sum(apply(submatricies,1,addem,data=singlecounts,xmatlen=xsublength,ymatlen=ysublength));
    
    Rd file 'sums.Rd':
     \usage lines wider than 90 characters:
     sums(coords, dim, xmin = min(coords[, 1]), xmax = max(coords[, 1]), ymin = min(coords[, 2]), ymax = max(coords[, 2]))
     \examples lines wider than 100 characters:
     function (coords,dim,xmin=min(coords[,1]),xmax=max(coords[,1]),ymin=min(coords[,2]),ymax=max(coords[,2])){
     cnts<-matrix(apply(bins,1,belongtoint,vect=coords,int.x=xints,int.y=yints),nrow=dim,byrow=TRUE);
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64