CRAN Package Check Results for Package GriegSmith

Last updated on 2014-07-30 03:48:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 3.76 41.23 44.98 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 3.53 40.04 43.57 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 109.03 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 103.14 NOTE
r-devel-osx-x86_64-clang 1.0 87.07 NOTE
r-devel-windows-ix86+x86_64 1.0 10.00 58.00 68.00 NOTE
r-patched-linux-x86_64 1.0 3.65 41.08 44.73 NOTE
r-patched-solaris-sparc 1.0 572.50 NOTE
r-patched-solaris-x86 1.0 139.70 NOTE
r-release-linux-ix86 1.0 4.27 51.47 55.74 NOTE
r-release-linux-x86_64 1.0 3.76 42.47 46.23 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 9.00 62.00 71.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 9.00 62.00 71.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: spatstat
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd files
Result: NOTE
    prepare_Rd: GriegSmith.Rd:42-44: Dropping empty section \details
    prepare_Rd: GriegSmith.Rd:45-51: Dropping empty section \value
    prepare_Rd: GriegSmith.Rd:62-64: Dropping empty section \note
    prepare_Rd: GriegSmith.Rd:68-70: Dropping empty section \seealso
    prepare_Rd: addem.Rd:28-30: Dropping empty section \details
    prepare_Rd: addem.Rd:31-37: Dropping empty section \value
    prepare_Rd: addem.Rd:44-46: Dropping empty section \note
    prepare_Rd: addem.Rd:41-43: Dropping empty section \author
    prepare_Rd: addem.Rd:38-40: Dropping empty section \references
    prepare_Rd: addem.Rd:50-52: Dropping empty section \seealso
    prepare_Rd: belongtoint.Rd:28-30: Dropping empty section \details
    prepare_Rd: belongtoint.Rd:31-37: Dropping empty section \value
    prepare_Rd: belongtoint.Rd:44-46: Dropping empty section \note
    prepare_Rd: belongtoint.Rd:41-43: Dropping empty section \author
    prepare_Rd: belongtoint.Rd:38-40: Dropping empty section \references
    prepare_Rd: belongtoint.Rd:50-52: Dropping empty section \seealso
    prepare_Rd: envelopes.Rd:25-27: Dropping empty section \details
    prepare_Rd: envelopes.Rd:28-34: Dropping empty section \value
    prepare_Rd: envelopes.Rd:41-43: Dropping empty section \note
    prepare_Rd: envelopes.Rd:38-40: Dropping empty section \author
    prepare_Rd: envelopes.Rd:35-37: Dropping empty section \references
    prepare_Rd: envelopes.Rd:47-49: Dropping empty section \seealso
    prepare_Rd: iterate.Rd:22-24: Dropping empty section \details
    prepare_Rd: iterate.Rd:25-31: Dropping empty section \value
    prepare_Rd: iterate.Rd:38-40: Dropping empty section \note
    prepare_Rd: iterate.Rd:35-37: Dropping empty section \author
    prepare_Rd: iterate.Rd:32-34: Dropping empty section \references
    prepare_Rd: iterate.Rd:44-46: Dropping empty section \seealso
    prepare_Rd: sumofsquares.Rd:22-24: Dropping empty section \details
    prepare_Rd: sumofsquares.Rd:25-31: Dropping empty section \value
    prepare_Rd: sumofsquares.Rd:38-40: Dropping empty section \note
    prepare_Rd: sumofsquares.Rd:35-37: Dropping empty section \author
    prepare_Rd: sumofsquares.Rd:32-34: Dropping empty section \references
    prepare_Rd: sumofsquares.Rd:44-46: Dropping empty section \seealso
    prepare_Rd: sums.Rd:34-36: Dropping empty section \details
    prepare_Rd: sums.Rd:37-43: Dropping empty section \value
    prepare_Rd: sums.Rd:50-52: Dropping empty section \note
    prepare_Rd: sums.Rd:47-49: Dropping empty section \author
    prepare_Rd: sums.Rd:44-46: Dropping empty section \references
    prepare_Rd: sums.Rd:56-58: Dropping empty section \seealso
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     R.css
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'GriegSmith.Rd':
     \examples lines wider than 100 characters:
     if (max(datapoints[,1]) != max(datapoints[,2])) stop("Your count data must have equal dimensions")
    
    Rd file 'belongtoint.Rd':
     \examples lines wider than 100 characters:
     sum(vect[,1] >= xval & vect[,1] < (xval+int.x) & vect[,2] >= yval & vect[,2] < (yval+int.y));
    
    Rd file 'envelopes.Rd':
     \examples lines wider than 100 characters:
     perm<-matrix(sample(as.vector(countdata),size=2^(dimention*2),replace=FALSE),nrow=2^dimention,byrow=TRUE);
     ret.val<-cbind(apply(GSpermprev[,-1],1,quantile,probs=c(.05)),apply(GSpermprev[,-1],1,quantile,probs=c(.95)))
    
    Rd file 'sumofsquares.Rd':
     \examples lines wider than 100 characters:
     squaredsums<-sum(apply(submatricies,1,addem,data=singlecounts,xmatlen=xsublength,ymatlen=ysublength));
    
    Rd file 'sums.Rd':
     \usage lines wider than 90 characters:
     sums(coords, dim, xmin = min(coords[, 1]), xmax = max(coords[, 1]), ymin = min(coords[, 2]), ymax = max(coords[, 2]))
     \examples lines wider than 100 characters:
     function (coords,dim,xmin=min(coords[,1]),xmax=max(coords[,1]),ymin=min(coords[,2]),ymax=max(coords[,2])){
     cnts<-matrix(apply(bins,1,belongtoint,vect=coords,int.x=xints,int.y=yints),nrow=dim,byrow=TRUE);
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc