CRAN Package Check Results for Package HAP.ROR

Last updated on 2014-10-02 09:53:03.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.08 22.46 23.54 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.06 22.25 23.32 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 50.05 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 54.89 NOTE
r-devel-osx-x86_64-clang 1.0 44.47 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 38.00 43.00 NOTE
r-patched-linux-x86_64 1.0 1.13 25.10 26.23 NOTE
r-patched-solaris-sparc 1.0 295.90 NOTE
r-patched-solaris-x86 1.0 68.00 NOTE
r-release-linux-ix86 1.0 1.44 32.76 34.20 NOTE
r-release-linux-x86_64 1.0 1.21 25.55 26.76 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 ERROR
r-release-windows-ix86+x86_64 1.0 5.00 42.00 47.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 42.00 46.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘ape’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘ape’ ‘hash’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    AIC: no visible global function definition for ‘hash’
    AIC: no visible global function definition for ‘values’
    AIC: no visible global function definition for ‘values<-’
    ODS.ror: no visible global function definition for ‘hash’
    ODS.ror: no visible global function definition for ‘values<-’
    ODS.ror: no visible global function definition for ‘keys’
    ODS.ror: no visible global function definition for ‘values’
    ODS.ror: no visible global function definition for ‘read.tree’
    ODS.ror: no visible global function definition for ‘nodelabels’
    cc.sim: no visible global function definition for ‘hash’
    cc.sim: no visible global function definition for ‘values<-’
    cc.sim: no visible global function definition for ‘values’
    collapse: no visible global function definition for ‘hash’
    collapse: no visible global function definition for ‘values<-’
    collapse: no visible global function definition for ‘keys’
    collapse: no visible global function definition for ‘values’
    deletion: no visible global function definition for ‘hash’
    deletion: no visible global function definition for ‘values<-’
    deletion: no visible global function definition for ‘keys’
    deletion: no visible global function definition for ‘values’
    grp.list: no visible global function definition for ‘hash’
    grp.list: no visible global function definition for ‘values’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'HAP.ROR-package.Rd':
     \examples lines wider than 100 characters:
     ODS.ror(case.sub=case.sub, ctl.sub=ctl.sub, lib.sub=lib.sub, lib.sub.names=lib.sub.names, records=ror.res$records, dev.list=ror.res$dev ... [TRUNCATED]
    
    Rd file 'HAP.ror.Rd':
     \usage lines wider than 90 characters:
     HAP.ror(case.sub, ctl.sub, lib.sub, lib.sub.names, alpha = 0.01, ref.level = NA, display.proc = TRUE)
    
    Rd file 'ODS.ror.Rd':
     \usage lines wider than 90 characters:
     ODS.ror(case.sub, ctl.sub, lib.sub, lib.sub.names, records, dev.list, AIC.list, deleted.snps.ls, proteinf, locus = "DRB1*", ref.level = ... [TRUNCATED]
     \examples lines wider than 100 characters:
     ODS.ror(case.sub=case.sub, ctl.sub=ctl.sub, lib.sub=lib.sub, lib.sub.names=lib.sub.names, records=ror.res$records, dev.list=ror.res$dev ... [TRUNCATED]
    
    Rd file 'cc.sim.Rd':
     \usage lines wider than 90 characters:
     cc.sim(n.ctrl, n.case, beta0, beta1, case.sub, ctl.sub, lib.sub, lib.sub.names, risk.type = "AA", risk.inx = 2, risk.names = c("301", " ... [TRUNCATED]
    
    Rd file 'deletion.Rd':
     \usage lines wider than 90 characters:
     deletion(lib, lib.names, case.sub, ctl.sub, aic.now, dev.now, df.now, rank = FALSE, cut = -1, delete.snp = -1, ref = "NA", alpha = 0.05 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard