CRAN Package Check Results for Package HBSTM

Last updated on 2015-07-04 09:48:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 2.40 38.90 41.30 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.1 2.40 37.71 40.11 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 81.87 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 79.47 NOTE
r-devel-osx-x86_64-clang 1.0.1 71.79 NOTE
r-devel-windows-ix86+x86_64 1.0.1 10.00 56.00 66.00 NOTE
r-patched-linux-x86_64 1.0.1 2.38 38.17 40.55 NOTE
r-patched-solaris-sparc 1.0.1 482.10 NOTE
r-patched-solaris-x86 1.0.1 99.40 NOTE
r-release-linux-x86_64 1.0.1 2.76 38.04 40.80 NOTE
r-release-osx-x86_64-mavericks 1.0.1 NOTE
r-release-windows-ix86+x86_64 1.0.1 9.00 55.00 64.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.1 10.00 71.00 81.00 OK

Check Details

Version: 1.0.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    .HBSTM.estim: no visible binding for global variable ‘median’
    .HBSTM.estim: no visible global function definition for ‘median’
    .HBSTM.fit: no visible global function definition for ‘rnorm’
    .HBSTM.fit: no visible global function definition for ‘rgamma’
    .HBSTM.fit: no visible global function definition for ‘par’
    .HBSTM.fit: no visible global function definition for ‘plot’
    .HBSTM.fit: no visible global function definition for ‘ts’
    .HBSTM.fit: no visible global function definition for ‘lines’
    .HBSTM.fit: no visible global function definition for ‘legend’
    .HBSTM.fit: no visible global function definition for ‘acf’
    .HBSTM.fit: no visible global function definition for ‘pacf’
    .HBSTM.fit: no visible binding for global variable ‘sd’
    .HBSTM.fit: no visible binding for global variable ‘median’
    .HBSTM.fit : <anonymous>: no visible global function definition for
     ‘quantile’
    .HBSTM.plotFit: no visible global function definition for ‘dev.new’
    .HBSTM.plotFit: no visible global function definition for ‘layout’
    .HBSTM.resid.plot: no visible global function definition for ‘dev.new’
    .HBSTM.resid.plot: no visible global function definition for
     ‘layout.show’
    .HBSTM.resid.plot: no visible global function definition for ‘layout’
    .HBSTM.resid.plot: no visible global function definition for ‘hist’
    .HBSTM.resid.plot: no visible global function definition for ‘plot’
    .HBSTM.resid.plot: no visible global function definition for ‘abline’
    .HBSTM.resid.plot: no visible global function definition for ‘qqnorm’
    .HBSTM.resid.plot: no visible global function definition for ‘qqline’
    .HBSTM.resid.plot: no visible global function definition for ‘par’
    .HBSTM.resid.plot: no visible global function definition for ‘acf’
    .HBSTM.resid.plot: no visible global function definition for ‘pacf’
    .results.HBSTM: no visible global function definition for ‘jpeg’
    .results.HBSTM: no visible global function definition for ‘dev.new’
    .results.HBSTM: no visible global function definition for ‘par’
    .results.HBSTM: no visible global function definition for ‘mtext’
    .results.HBSTM: no visible global function definition for ‘layout.show’
    .results.HBSTM: no visible global function definition for ‘layout’
    MHSpat: no visible global function definition for ‘runif’
    analysis.spatial: no visible global function definition for ‘median’
    analysis.spatial: no visible global function definition for ‘quantile’
    auxplotFit: no visible global function definition for ‘image’
    auxplotFit: no visible global function definition for ‘topo.colors’
    auxplotFit: no visible global function definition for ‘contour’
    estYt.check: no visible global function definition for ‘object.size’
    estYt.check: no visible global function definition for ‘memory.limit’
    graph: no visible global function definition for ‘dev.off’
    initialStand.creation: no visible global function definition for ‘lm’
    initialStand.creation: no visible global function definition for ‘coef’
    initialStand.creation: no visible global function definition for ‘sd’
    mat.aux: no visible global function definition for ‘median’
    mat.aux: no visible global function definition for ‘quantile’
    plotCI.aux: no visible global function definition for ‘plot’
    plotCI.aux: no visible global function definition for ‘axis’
    plotCI.aux: no visible global function definition for ‘arrows’
    plotCI.aux: no visible global function definition for ‘points’
    plotCI.spatial: no visible global function definition for ‘jpeg’
    plotCI.spatial: no visible global function definition for ‘dev.new’
    plotCI.spatial: no visible global function definition for ‘par’
    plotCI.spatial: no visible global function definition for ‘layout’
    plotCI.spatial: no visible global function definition for ‘mtext’
    save.check: no visible global function definition for ‘object.size’
    save.check: no visible global function definition for ‘memory.limit’
    truncNorm: no visible global function definition for ‘rnorm’
    truncNorm: no visible global function definition for ‘rexp’
    truncNorm: no visible global function definition for ‘runif’
    estimation,HBSTM: no visible binding for global variable ‘median’
    estimation,HBSTM: no visible global function definition for ‘median’
    hbstm.fit,HBSTM: no visible global function definition for ‘rnorm’
    hbstm.fit,HBSTM: no visible global function definition for ‘rgamma’
    hbstm.fit,HBSTM: no visible global function definition for ‘par’
    hbstm.fit,HBSTM: no visible global function definition for ‘plot’
    hbstm.fit,HBSTM: no visible global function definition for ‘ts’
    hbstm.fit,HBSTM: no visible global function definition for ‘lines’
    hbstm.fit,HBSTM: no visible global function definition for ‘legend’
    hbstm.fit,HBSTM: no visible global function definition for ‘acf’
    hbstm.fit,HBSTM: no visible global function definition for ‘pacf’
    hbstm.fit,HBSTM: no visible binding for global variable ‘sd’
    hbstm.fit,HBSTM: no visible binding for global variable ‘median’
    hbstm.fit,HBSTM : <anonymous>: no visible global function definition
     for ‘quantile’
    plotFit,HBSTM: no visible global function definition for ‘dev.new’
    plotFit,HBSTM: no visible global function definition for ‘layout’
    plotRes,HBSTM: no visible global function definition for ‘dev.new’
    plotRes,HBSTM: no visible global function definition for ‘layout.show’
    plotRes,HBSTM: no visible global function definition for ‘layout’
    plotRes,HBSTM: no visible global function definition for ‘hist’
    plotRes,HBSTM: no visible global function definition for ‘plot’
    plotRes,HBSTM: no visible global function definition for ‘abline’
    plotRes,HBSTM: no visible global function definition for ‘qqnorm’
    plotRes,HBSTM: no visible global function definition for ‘qqline’
    plotRes,HBSTM: no visible global function definition for ‘par’
    plotRes,HBSTM: no visible global function definition for ‘acf’
    plotRes,HBSTM: no visible global function definition for ‘pacf’
    results,HBSTM: no visible global function definition for ‘jpeg’
    results,HBSTM: no visible global function definition for ‘dev.new’
    results,HBSTM: no visible global function definition for ‘par’
    results,HBSTM: no visible global function definition for ‘mtext’
    results,HBSTM: no visible global function definition for ‘layout.show’
    results,HBSTM: no visible global function definition for ‘layout’
    Undefined global functions or variables:
     abline acf arrows axis coef contour dev.new dev.off hist image jpeg
     layout layout.show legend lines lm median memory.limit mtext
     object.size pacf par plot points qqline qqnorm quantile rexp rgamma
     rnorm runif sd topo.colors ts
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    [,Autoregressive-character-missing-missing: warning in switch(EXP = i,
     avect = return(x@avect), a0vect = return(x@a0vect), a0L =
     return(x@a0L), spatialA = return(x@spatialA), sigma2A =
     return(x@sigma2A), H = return(x@H), subdiag = return(x@subdiag),
     stop("Error: ", i, " is not a Autoregressive slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,Autoregressive0-character-missing-missing: warning in switch(EXP = i,
     a0L0 = return(x@a0L0), siga0L0 = return(x@siga0L0), sigma2A0 =
     return(x@sigma2A0), spatialA0 = return(x@spatialA0), subdiag0 =
     return(x@subdiag0), stop("Error: ", i, " is not a Autoregressive0
     slot")): partial argument match of 'EXP' to 'EXPR'
    [,CosSinMatrix-character-missing-missing: warning in switch(EXP = i,
     cosMat = return(x@cosMat), sinMat = return(x@sinMat), littlecosMat =
     return(x@littlecosMat), littlesinMat = return(x@littlesinMat),
     stop("Error: ", i, " is not a CosSinMatrix slot")): partial argument
     match of 'EXP' to 'EXPR'
    [,HBSTM-character-missing-missing: warning in switch(EXP = i,
     Parameters = return(x@Parameters), Hyperpriors =
     return(x@Hyperpriors), seed = return(x@seed), mse = return(x@mse),
     iterations = return(x@iterations), newGrid = return(x@newGrid), K =
     return(x@K), Zt = return(x@Zt), fitted = return(x@fitted), residuals
     = return(x@residuals), MCMCsamp = return(x@MCMCsamp), MCMCclass =
     return(x@MCMCclass), stop("Error: ", i, " is not a STmodel slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,Hyperpriors-character-missing-missing: warning in switch(EXP = i, Mu0
     = return(x@Mu0), Mt0 = return(x@Mt0), Xt0 = return(x@Xt0), sigma2Y0 =
     return(x@sigma2Y0), sigma2E0 = return(x@sigma2E0), stop("Error: ", i,
     " is not a Hyperpriors slot")): partial argument match of 'EXP' to
     'EXPR'
    [,Mt-character-missing-missing: warning in switch(EXP = i, Mt =
     return(x@Mt), seas = return(x@seas), stop("Error: ", i, " is not a Mt
     slot")): partial argument match of 'EXP' to 'EXPR'
    [,Mt0-character-missing-missing: warning in switch(EXP = i, seas0 =
     return(x@seas0), stop("Error: ", i, " is not a Mt0 slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,MtAux-character-missing-missing: warning in switch(EXP = i, seas =
     return(x@seas), stop("Error: ", i, " is not a MtAux slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,Mu-character-missing-missing: warning in switch(EXP = i, muvect =
     return(x@muvect), mu0vect = return(x@mu0vect), mu0L = return(x@mu0L),
     sigma2Mu = return(x@sigma2Mu), spatialMu = return(x@spatialMu),
     stop("Error: ", i, " is not a Mu slot")): partial argument match of
     'EXP' to 'EXPR'
    [,Mu0-character-missing-missing: warning in switch(EXP = i, mu0L0 =
     return(x@mu0L0), sigmu0L0 = return(x@sigmu0L0), sigma2Mu0 =
     return(x@sigma2Mu0), spatialMu0 = return(x@spatialMu0), stop("Error:
     ", i, " is not a Mu0 slot")): partial argument match of 'EXP' to
     'EXPR'
    [,Parameters-character-missing-missing: warning in switch(EXP = i, Mu =
     return(x@Mu), Mt = return(x@Mt), Xt = return(x@Xt), Yt =
     return(x@Yt), sigma2Y = return(x@sigma2Y), sigma2E =
     return(x@sigma2E), stop("Error: ", i, " is not a Parameters slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,Seas-character-missing-missing: warning in switch(EXP = i, w =
     return(x@w), fvect = return(x@fvect), f0L = return(x@f0L), gvect =
     return(x@gvect), g0L = return(x@g0L), stop("Error: ", i, " is not a
     Seas slot")): partial argument match of 'EXP' to 'EXPR'
    [,Seas0-character-missing-missing: warning in switch(EXP = i, sigf0L0 =
     return(x@sigf0L0), f0L0 = return(x@f0L0), sigg0L0 =
     return(x@sigg0L0), g0L0 = return(x@g0L0), stop("Error: ", i, " is not
     a Seas0 slot")): partial argument match of 'EXP' to 'EXPR'
    [,SpatC-character-missing-missing: warning in switch(EXP = i, Matalpha
     = return(x@Matalpha), Matbeta = return(x@Matbeta), Matphi =
     return(x@Matphi), Mattheta = return(x@Mattheta), stop("Error: ", i, "
     is not a SpatC slot")): partial argument match of 'EXP' to 'EXPR'
    [,SpatH-character-missing-missing: warning in switch(EXP = i, west =
     return(x@west), east = return(x@east), north = return(x@north), south
     = return(x@south), southwest = return(x@southwest), northeast =
     return(x@northeast), southeast = return(x@southeast), northwest =
     return(x@northwest), stop("Error: ", i, " is not a SpatH slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,SpatParam-character-missing-missing: warning in switch(EXP = i, alpha
     = return(x@alpha), beta = return(x@beta), phi = return(x@phi), theta
     = return(x@theta), Cmat = return(x@Cmat), lags = return(x@lags), dirs
     = return(x@dirs), stop("Error: ", i, " is not a SpatParam slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,SpatParam0-character-missing-missing: warning in switch(EXP = i,
     alpha0 = return(x@alpha0), beta0 = return(x@beta0), phi0 =
     return(x@phi0), theta0 = return(x@theta0), stop("Error: ", i, " is
     not a SpatParam0 slot")): partial argument match of 'EXP' to 'EXPR'
    [,VectSubdiag-character-missing-missing: warning in switch(EXP = i,
     east = return(x@east), west = return(x@west), north =
     return(x@north), south = return(x@south), southeast =
     return(x@southeast), northwest = return(x@northwest), southwest =
     return(x@southwest), northeast = return(x@northeast), lags =
     return(x@lags), dirs = return(x@dirs), stop("Error: ", i, " is not a
     VectSubdiag slot")): partial argument match of 'EXP' to 'EXPR'
    [,VectSubdiag0-character-missing-missing: warning in switch(EXP = i,
     east0 = return(x@east0), west0 = return(x@west0), north0 =
     return(x@north0), south0 = return(x@south0), southeast0 =
     return(x@southeast0), northwest0 = return(x@northwest0), southwest0 =
     return(x@southwest0), northeast0 = return(x@northeast0), stop("Error:
     ", i, " is not a VectSubdiag0 slot")): partial argument match of
     'EXP' to 'EXPR'
    [,Xt-character-missing-missing: warning in switch(EXP = i, Xt =
     return(x@Xt), X0 = return(x@X0), sigma2N = return(x@sigma2N), AR =
     return(x@AR), templags = return(x@templags), stop("Error: ", i, " is
     not a Xt slot")): partial argument match of 'EXP' to 'EXPR'
    [,Xt0-character-missing-missing: warning in switch(EXP = i, X00 =
     return(x@X00), sigma2X00 = return(x@sigma2X00), AR0 = return(x@AR0),
     sigma2N0 = return(x@sigma2N0), stop("Error: ", i, " is not a Xt0
     slot")): partial argument match of 'EXP' to 'EXPR'
    [<-,Autoregressive-character-missing: warning in switch(EXP = i, avect
     = x@avect <- value, a0vect = x@a0vect <- value, a0L = x@a0L <- value,
     spatialA = x@spatialA <- value, sigma2A = x@sigma2A <- value, H = x@H
     <- value, subdiag = x@subdiag <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Autoregressive0-character-missing: warning in switch(EXP = i, a0L0
     = x@a0L0 <- value, siga0L0 = x@siga0L0 <- value, sigma2A0 =
     x@sigma2A0 <- value, spatialA0 = x@spatialA0 <- value, subdiag0 =
     x@subdiag0 <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,CosSinMatrix-character-missing: warning in switch(EXP = i, cosMat =
     x@cosMat <- value, sinMat = x@sinMat <- value, littlecosMat =
     x@littlecosMat <- value, littlesinMat = x@littlesinMat <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,HBSTM-character-missing: warning in switch(EXP = i, Parameters =
     x@Parameters <- value, Hyperpriors = x@Hyperpriors <- value, seed =
     x@seed <- value, mse = x@mse <- value, iterations = x@iterations <-
     value, newGrid = x@newGrid <- value, K = x@K <- value, Zt = x@Zt <-
     value, fitted = x@fitted <- value, residuals = x@residuals <- value,
     MCMCsamp = x@MCMCsamp <- value, MCMCclass = x@MCMCclass <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,Hyperpriors-character-missing: warning in switch(EXP = i, Mu0 =
     x@Mu0 <- value, Mt0 = x@Mt0 <- value, Xt0 = x@Xt0 <- value, sigma2Y0
     = x@sigma2Y0 <- value, sigma2E0 = x@sigma2E0 <- value): partial
     argument match of 'EXP' to 'EXPR'
    [<-,Mt-character-missing: warning in switch(EXP = i, Mt = x@Mt <-
     value, seas = x@seas <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,Mt0-character-missing: warning in switch(EXP = i, seas0 = x@seas0
     <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,MtAux-character-missing: warning in switch(EXP = i, seas = x@seas
     <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,Mu-character-missing: warning in switch(EXP = i, muvect = x@muvect
     <- value, mu0vect = x@mu0vect <- value, mu0L = x@mu0L <- value,
     sigma2Mu = x@sigma2Mu <- value, spatialMu = x@spatialMu <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,Mu0-character-missing: warning in switch(EXP = i, mu0L0 = x@mu0L0
     <- value, sigmu0L0 = x@sigmu0L0 <- value, sigma2Mu0 = x@sigma2Mu0 <-
     value, spatialMu0 = x@spatialMu0 <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Parameters-character-missing: warning in switch(EXP = i, Mu = x@Mu
     <- value, Mt = x@Mt <- value, Xt = x@Xt <- value, Yt = x@Yt <- value,
     sigma2Y = x@sigma2Y <- value, sigma2E = x@sigma2E <- value): partial
     argument match of 'EXP' to 'EXPR'
    [<-,Seas-character-missing: warning in switch(EXP = i, w = x@w <-
     value, fvect = x@fvect <- value, f0L = x@f0L <- value, gvect =
     x@gvect <- value, g0L = x@g0L <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Seas0-character-missing: warning in switch(EXP = i, sigf0L0 =
     x@sigf0L0 <- value, f0L0 = x@f0L0 <- value, sigg0L0 = x@sigg0L0 <-
     value, g0L0 = x@g0L0 <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,SpatC-character-missing: warning in switch(EXP = i, Matalpha =
     x@Matalpha <- value, Matbeta = x@Matbeta <- value, Matphi = x@Matphi
     <- value, Mattheta = x@Mattheta <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,SpatH-character-missing: warning in switch(EXP = i, west = x@west
     <- value, east = x@east <- value, north = x@north <- value, south =
     x@south <- value, southwest = x@southwest <- value, northeast =
     x@northeast <- value, southeast = x@southeast <- value, northwest =
     x@northwest <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,SpatParam-character-missing: warning in switch(EXP = i, alpha =
     x@alpha <- value, beta = x@beta <- value, phi = x@phi <- value, theta
     = x@theta <- value, Cmat = x@Cmat <- value, lags = x@lags <- value,
     dirs = x@dirs <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,SpatParam0-character-missing: warning in switch(EXP = i, alpha0 =
     x@alpha0 <- value, beta0 = x@beta0 <- value, phi0 = x@phi0 <- value,
     theta0 = x@MatTheta <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,VectSubdiag-character-missing: warning in switch(EXP = i, east =
     x@east <- value, west = x@west <- value, north = x@north <- value,
     south = x@south <- value, southeast = x@southeast <- value, northwest
     = x@northwest <- value, southwest = x@southwest <- value, northeast =
     x@northeast <- value, lags = x@lags <- value, dirs = x@dirs <-
     value): partial argument match of 'EXP' to 'EXPR'
    [<-,VectSubdiag0-character-missing: warning in switch(EXP = i, east0 =
     x@east0 <- value, west0 = x@west0 <- value, north0 = x@north0 <-
     value, south0 = x@south0 <- value, southeast0 = x@southeast0 <-
     value, northwest0 = x@northwest0 <- value, southwest0 = x@southwest0
     <- value, northeast0 = x@northeast0 <- value): partial argument match
     of 'EXP' to 'EXPR'
    [<-,Xt-character-missing: warning in switch(EXP = i, Xt = x@Xt <-
     value, X0 = x@X0 <- value, sigma2N = x@sigma2N <- value, AR = x@AR <-
     value, templags = x@templags <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Xt0-character-missing: warning in switch(EXP = i, X00 = x@X00 <-
     value, sigma2X00 = x@sigma2X00 <- value, AR0 = x@AR0 <- value,
     sigma2N0 = x@sigma2N0 <- value): partial argument match of 'EXP' to
     'EXPR'
    .HBSTM.estim: no visible binding for global variable ‘median’
    .HBSTM.estim: no visible global function definition for ‘median’
    .HBSTM.fit: no visible global function definition for ‘rnorm’
    .HBSTM.fit: no visible global function definition for ‘rgamma’
    .HBSTM.fit: no visible global function definition for ‘par’
    .HBSTM.fit: no visible global function definition for ‘plot’
    .HBSTM.fit: no visible global function definition for ‘ts’
    .HBSTM.fit: no visible global function definition for ‘lines’
    .HBSTM.fit: no visible global function definition for ‘legend’
    .HBSTM.fit: no visible global function definition for ‘acf’
    .HBSTM.fit: no visible global function definition for ‘pacf’
    .HBSTM.fit: no visible binding for global variable ‘sd’
    .HBSTM.fit: no visible binding for global variable ‘median’
    .HBSTM.fit : <anonymous>: no visible global function definition for
     ‘quantile’
    .HBSTM.plotFit: no visible global function definition for ‘dev.new’
    .HBSTM.plotFit: no visible global function definition for ‘layout’
    .HBSTM.resid.plot: no visible global function definition for ‘dev.new’
    .HBSTM.resid.plot: no visible global function definition for
     ‘layout.show’
    .HBSTM.resid.plot: no visible global function definition for ‘layout’
    .HBSTM.resid.plot: no visible global function definition for ‘hist’
    .HBSTM.resid.plot: no visible global function definition for ‘plot’
    .HBSTM.resid.plot: no visible global function definition for ‘abline’
    .HBSTM.resid.plot: no visible global function definition for ‘qqnorm’
    .HBSTM.resid.plot: no visible global function definition for ‘qqline’
    .HBSTM.resid.plot: no visible global function definition for ‘par’
    .HBSTM.resid.plot: no visible global function definition for ‘acf’
    .HBSTM.resid.plot: no visible global function definition for ‘pacf’
    .results.HBSTM: no visible global function definition for ‘jpeg’
    .results.HBSTM: no visible global function definition for ‘dev.new’
    .results.HBSTM: no visible global function definition for ‘par’
    .results.HBSTM: no visible global function definition for ‘mtext’
    .results.HBSTM: no visible global function definition for ‘layout.show’
    .results.HBSTM: no visible global function definition for ‘layout’
    MHSpat: no visible global function definition for ‘runif’
    analysis.spatial: no visible global function definition for ‘median’
    analysis.spatial: no visible global function definition for ‘quantile’
    auxplotFit: no visible global function definition for ‘image’
    auxplotFit: no visible global function definition for ‘topo.colors’
    auxplotFit: no visible global function definition for ‘contour’
    estYt.check: no visible global function definition for ‘object.size’
    estYt.check: no visible global function definition for ‘memory.limit’
    graph: no visible global function definition for ‘dev.off’
    initialStand.creation: no visible global function definition for ‘lm’
    initialStand.creation: no visible global function definition for ‘coef’
    initialStand.creation: no visible global function definition for ‘sd’
    mat.aux: no visible global function definition for ‘median’
    mat.aux: no visible global function definition for ‘quantile’
    plotCI.aux: no visible global function definition for ‘plot’
    plotCI.aux: no visible global function definition for ‘axis’
    plotCI.aux: no visible global function definition for ‘arrows’
    plotCI.aux: no visible global function definition for ‘points’
    plotCI.spatial: no visible global function definition for ‘jpeg’
    plotCI.spatial: no visible global function definition for ‘dev.new’
    plotCI.spatial: no visible global function definition for ‘par’
    plotCI.spatial: no visible global function definition for ‘layout’
    plotCI.spatial: no visible global function definition for ‘mtext’
    save.check: no visible global function definition for ‘object.size’
    save.check: no visible global function definition for ‘memory.limit’
    truncNorm: no visible global function definition for ‘rnorm’
    truncNorm: no visible global function definition for ‘rexp’
    truncNorm: no visible global function definition for ‘runif’
    estimation,HBSTM: no visible binding for global variable ‘median’
    estimation,HBSTM: no visible global function definition for ‘median’
    hbstm.fit,HBSTM: no visible global function definition for ‘rnorm’
    hbstm.fit,HBSTM: no visible global function definition for ‘rgamma’
    hbstm.fit,HBSTM: no visible global function definition for ‘par’
    hbstm.fit,HBSTM: no visible global function definition for ‘plot’
    hbstm.fit,HBSTM: no visible global function definition for ‘ts’
    hbstm.fit,HBSTM: no visible global function definition for ‘lines’
    hbstm.fit,HBSTM: no visible global function definition for ‘legend’
    hbstm.fit,HBSTM: no visible global function definition for ‘acf’
    hbstm.fit,HBSTM: no visible global function definition for ‘pacf’
    hbstm.fit,HBSTM: no visible binding for global variable ‘sd’
    hbstm.fit,HBSTM: no visible binding for global variable ‘median’
    hbstm.fit,HBSTM : <anonymous>: no visible global function definition
     for ‘quantile’
    plotFit,HBSTM: no visible global function definition for ‘dev.new’
    plotFit,HBSTM: no visible global function definition for ‘layout’
    plotRes,HBSTM: no visible global function definition for ‘dev.new’
    plotRes,HBSTM: no visible global function definition for ‘layout.show’
    plotRes,HBSTM: no visible global function definition for ‘layout’
    plotRes,HBSTM: no visible global function definition for ‘hist’
    plotRes,HBSTM: no visible global function definition for ‘plot’
    plotRes,HBSTM: no visible global function definition for ‘abline’
    plotRes,HBSTM: no visible global function definition for ‘qqnorm’
    plotRes,HBSTM: no visible global function definition for ‘qqline’
    plotRes,HBSTM: no visible global function definition for ‘par’
    plotRes,HBSTM: no visible global function definition for ‘acf’
    plotRes,HBSTM: no visible global function definition for ‘pacf’
    results,HBSTM: no visible global function definition for ‘jpeg’
    results,HBSTM: no visible global function definition for ‘dev.new’
    results,HBSTM: no visible global function definition for ‘par’
    results,HBSTM: no visible global function definition for ‘mtext’
    results,HBSTM: no visible global function definition for ‘layout.show’
    results,HBSTM: no visible global function definition for ‘layout’
    Undefined global functions or variables:
     abline acf arrows axis coef contour dev.new dev.off hist image jpeg
     layout layout.show legend lines lm median memory.limit mtext
     object.size pacf par plot points qqline qqnorm quantile rexp rgamma
     rnorm runif sd topo.colors ts
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    [,Autoregressive-character-missing-missing: warning in switch(EXP = i,
     avect = return(x@avect), a0vect = return(x@a0vect), a0L =
     return(x@a0L), spatialA = return(x@spatialA), sigma2A =
     return(x@sigma2A), H = return(x@H), subdiag = return(x@subdiag),
     stop("Error: ", i, " is not a Autoregressive slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,Autoregressive0-character-missing-missing: warning in switch(EXP = i,
     a0L0 = return(x@a0L0), siga0L0 = return(x@siga0L0), sigma2A0 =
     return(x@sigma2A0), spatialA0 = return(x@spatialA0), subdiag0 =
     return(x@subdiag0), stop("Error: ", i, " is not a Autoregressive0
     slot")): partial argument match of 'EXP' to 'EXPR'
    [,CosSinMatrix-character-missing-missing: warning in switch(EXP = i,
     cosMat = return(x@cosMat), sinMat = return(x@sinMat), littlecosMat =
     return(x@littlecosMat), littlesinMat = return(x@littlesinMat),
     stop("Error: ", i, " is not a CosSinMatrix slot")): partial argument
     match of 'EXP' to 'EXPR'
    [,HBSTM-character-missing-missing: warning in switch(EXP = i,
     Parameters = return(x@Parameters), Hyperpriors =
     return(x@Hyperpriors), seed = return(x@seed), mse = return(x@mse),
     iterations = return(x@iterations), newGrid = return(x@newGrid), K =
     return(x@K), Zt = return(x@Zt), fitted = return(x@fitted), residuals
     = return(x@residuals), MCMCsamp = return(x@MCMCsamp), MCMCclass =
     return(x@MCMCclass), stop("Error: ", i, " is not a STmodel slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,Hyperpriors-character-missing-missing: warning in switch(EXP = i, Mu0
     = return(x@Mu0), Mt0 = return(x@Mt0), Xt0 = return(x@Xt0), sigma2Y0 =
     return(x@sigma2Y0), sigma2E0 = return(x@sigma2E0), stop("Error: ", i,
     " is not a Hyperpriors slot")): partial argument match of 'EXP' to
     'EXPR'
    [,Mt-character-missing-missing: warning in switch(EXP = i, Mt =
     return(x@Mt), seas = return(x@seas), stop("Error: ", i, " is not a Mt
     slot")): partial argument match of 'EXP' to 'EXPR'
    [,Mt0-character-missing-missing: warning in switch(EXP = i, seas0 =
     return(x@seas0), stop("Error: ", i, " is not a Mt0 slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,MtAux-character-missing-missing: warning in switch(EXP = i, seas =
     return(x@seas), stop("Error: ", i, " is not a MtAux slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,Mu-character-missing-missing: warning in switch(EXP = i, muvect =
     return(x@muvect), mu0vect = return(x@mu0vect), mu0L = return(x@mu0L),
     sigma2Mu = return(x@sigma2Mu), spatialMu = return(x@spatialMu),
     stop("Error: ", i, " is not a Mu slot")): partial argument match of
     'EXP' to 'EXPR'
    [,Mu0-character-missing-missing: warning in switch(EXP = i, mu0L0 =
     return(x@mu0L0), sigmu0L0 = return(x@sigmu0L0), sigma2Mu0 =
     return(x@sigma2Mu0), spatialMu0 = return(x@spatialMu0), stop("Error:
     ", i, " is not a Mu0 slot")): partial argument match of 'EXP' to
     'EXPR'
    [,Parameters-character-missing-missing: warning in switch(EXP = i, Mu =
     return(x@Mu), Mt = return(x@Mt), Xt = return(x@Xt), Yt =
     return(x@Yt), sigma2Y = return(x@sigma2Y), sigma2E =
     return(x@sigma2E), stop("Error: ", i, " is not a Parameters slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,Seas-character-missing-missing: warning in switch(EXP = i, w =
     return(x@w), fvect = return(x@fvect), f0L = return(x@f0L), gvect =
     return(x@gvect), g0L = return(x@g0L), stop("Error: ", i, " is not a
     Seas slot")): partial argument match of 'EXP' to 'EXPR'
    [,Seas0-character-missing-missing: warning in switch(EXP = i, sigf0L0 =
     return(x@sigf0L0), f0L0 = return(x@f0L0), sigg0L0 =
     return(x@sigg0L0), g0L0 = return(x@g0L0), stop("Error: ", i, " is not
     a Seas0 slot")): partial argument match of 'EXP' to 'EXPR'
    [,SpatC-character-missing-missing: warning in switch(EXP = i, Matalpha
     = return(x@Matalpha), Matbeta = return(x@Matbeta), Matphi =
     return(x@Matphi), Mattheta = return(x@Mattheta), stop("Error: ", i, "
     is not a SpatC slot")): partial argument match of 'EXP' to 'EXPR'
    [,SpatH-character-missing-missing: warning in switch(EXP = i, west =
     return(x@west), east = return(x@east), north = return(x@north), south
     = return(x@south), southwest = return(x@southwest), northeast =
     return(x@northeast), southeast = return(x@southeast), northwest =
     return(x@northwest), stop("Error: ", i, " is not a SpatH slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,SpatParam-character-missing-missing: warning in switch(EXP = i, alpha
     = return(x@alpha), beta = return(x@beta), phi = return(x@phi), theta
     = return(x@theta), Cmat = return(x@Cmat), lags = return(x@lags), dirs
     = return(x@dirs), stop("Error: ", i, " is not a SpatParam slot")):
     partial argument match of 'EXP' to 'EXPR'
    [,SpatParam0-character-missing-missing: warning in switch(EXP = i,
     alpha0 = return(x@alpha0), beta0 = return(x@beta0), phi0 =
     return(x@phi0), theta0 = return(x@theta0), stop("Error: ", i, " is
     not a SpatParam0 slot")): partial argument match of 'EXP' to 'EXPR'
    [,VectSubdiag-character-missing-missing: warning in switch(EXP = i,
     east = return(x@east), west = return(x@west), north =
     return(x@north), south = return(x@south), southeast =
     return(x@southeast), northwest = return(x@northwest), southwest =
     return(x@southwest), northeast = return(x@northeast), lags =
     return(x@lags), dirs = return(x@dirs), stop("Error: ", i, " is not a
     VectSubdiag slot")): partial argument match of 'EXP' to 'EXPR'
    [,VectSubdiag0-character-missing-missing: warning in switch(EXP = i,
     east0 = return(x@east0), west0 = return(x@west0), north0 =
     return(x@north0), south0 = return(x@south0), southeast0 =
     return(x@southeast0), northwest0 = return(x@northwest0), southwest0 =
     return(x@southwest0), northeast0 = return(x@northeast0), stop("Error:
     ", i, " is not a VectSubdiag0 slot")): partial argument match of
     'EXP' to 'EXPR'
    [,Xt-character-missing-missing: warning in switch(EXP = i, Xt =
     return(x@Xt), X0 = return(x@X0), sigma2N = return(x@sigma2N), AR =
     return(x@AR), templags = return(x@templags), stop("Error: ", i, " is
     not a Xt slot")): partial argument match of 'EXP' to 'EXPR'
    [,Xt0-character-missing-missing: warning in switch(EXP = i, X00 =
     return(x@X00), sigma2X00 = return(x@sigma2X00), AR0 = return(x@AR0),
     sigma2N0 = return(x@sigma2N0), stop("Error: ", i, " is not a Xt0
     slot")): partial argument match of 'EXP' to 'EXPR'
    [<-,Autoregressive-character-missing: warning in switch(EXP = i, avect
     = x@avect <- value, a0vect = x@a0vect <- value, a0L = x@a0L <- value,
     spatialA = x@spatialA <- value, sigma2A = x@sigma2A <- value, H = x@H
     <- value, subdiag = x@subdiag <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Autoregressive0-character-missing: warning in switch(EXP = i, a0L0
     = x@a0L0 <- value, siga0L0 = x@siga0L0 <- value, sigma2A0 =
     x@sigma2A0 <- value, spatialA0 = x@spatialA0 <- value, subdiag0 =
     x@subdiag0 <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,CosSinMatrix-character-missing: warning in switch(EXP = i, cosMat =
     x@cosMat <- value, sinMat = x@sinMat <- value, littlecosMat =
     x@littlecosMat <- value, littlesinMat = x@littlesinMat <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,HBSTM-character-missing: warning in switch(EXP = i, Parameters =
     x@Parameters <- value, Hyperpriors = x@Hyperpriors <- value, seed =
     x@seed <- value, mse = x@mse <- value, iterations = x@iterations <-
     value, newGrid = x@newGrid <- value, K = x@K <- value, Zt = x@Zt <-
     value, fitted = x@fitted <- value, residuals = x@residuals <- value,
     MCMCsamp = x@MCMCsamp <- value, MCMCclass = x@MCMCclass <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,Hyperpriors-character-missing: warning in switch(EXP = i, Mu0 =
     x@Mu0 <- value, Mt0 = x@Mt0 <- value, Xt0 = x@Xt0 <- value, sigma2Y0
     = x@sigma2Y0 <- value, sigma2E0 = x@sigma2E0 <- value): partial
     argument match of 'EXP' to 'EXPR'
    [<-,Mt-character-missing: warning in switch(EXP = i, Mt = x@Mt <-
     value, seas = x@seas <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,Mt0-character-missing: warning in switch(EXP = i, seas0 = x@seas0
     <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,MtAux-character-missing: warning in switch(EXP = i, seas = x@seas
     <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,Mu-character-missing: warning in switch(EXP = i, muvect = x@muvect
     <- value, mu0vect = x@mu0vect <- value, mu0L = x@mu0L <- value,
     sigma2Mu = x@sigma2Mu <- value, spatialMu = x@spatialMu <- value):
     partial argument match of 'EXP' to 'EXPR'
    [<-,Mu0-character-missing: warning in switch(EXP = i, mu0L0 = x@mu0L0
     <- value, sigmu0L0 = x@sigmu0L0 <- value, sigma2Mu0 = x@sigma2Mu0 <-
     value, spatialMu0 = x@spatialMu0 <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Parameters-character-missing: warning in switch(EXP = i, Mu = x@Mu
     <- value, Mt = x@Mt <- value, Xt = x@Xt <- value, Yt = x@Yt <- value,
     sigma2Y = x@sigma2Y <- value, sigma2E = x@sigma2E <- value): partial
     argument match of 'EXP' to 'EXPR'
    [<-,Seas-character-missing: warning in switch(EXP = i, w = x@w <-
     value, fvect = x@fvect <- value, f0L = x@f0L <- value, gvect =
     x@gvect <- value, g0L = x@g0L <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Seas0-character-missing: warning in switch(EXP = i, sigf0L0 =
     x@sigf0L0 <- value, f0L0 = x@f0L0 <- value, sigg0L0 = x@sigg0L0 <-
     value, g0L0 = x@g0L0 <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,SpatC-character-missing: warning in switch(EXP = i, Matalpha =
     x@Matalpha <- value, Matbeta = x@Matbeta <- value, Matphi = x@Matphi
     <- value, Mattheta = x@Mattheta <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,SpatH-character-missing: warning in switch(EXP = i, west = x@west
     <- value, east = x@east <- value, north = x@north <- value, south =
     x@south <- value, southwest = x@southwest <- value, northeast =
     x@northeast <- value, southeast = x@southeast <- value, northwest =
     x@northwest <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,SpatParam-character-missing: warning in switch(EXP = i, alpha =
     x@alpha <- value, beta = x@beta <- value, phi = x@phi <- value, theta
     = x@theta <- value, Cmat = x@Cmat <- value, lags = x@lags <- value,
     dirs = x@dirs <- value): partial argument match of 'EXP' to 'EXPR'
    [<-,SpatParam0-character-missing: warning in switch(EXP = i, alpha0 =
     x@alpha0 <- value, beta0 = x@beta0 <- value, phi0 = x@phi0 <- value,
     theta0 = x@MatTheta <- value): partial argument match of 'EXP' to
     'EXPR'
    [<-,VectSubdiag-character-missing: warning in switch(EXP = i, east =
     x@east <- value, west = x@west <- value, north = x@north <- value,
     south = x@south <- value, southeast = x@southeast <- value, northwest
     = x@northwest <- value, southwest = x@southwest <- value, northeast =
     x@northeast <- value, lags = x@lags <- value, dirs = x@dirs <-
     value): partial argument match of 'EXP' to 'EXPR'
    [<-,VectSubdiag0-character-missing: warning in switch(EXP = i, east0 =
     x@east0 <- value, west0 = x@west0 <- value, north0 = x@north0 <-
     value, south0 = x@south0 <- value, southeast0 = x@southeast0 <-
     value, northwest0 = x@northwest0 <- value, southwest0 = x@southwest0
     <- value, northeast0 = x@northeast0 <- value): partial argument match
     of 'EXP' to 'EXPR'
    [<-,Xt-character-missing: warning in switch(EXP = i, Xt = x@Xt <-
     value, X0 = x@X0 <- value, sigma2N = x@sigma2N <- value, AR = x@AR <-
     value, templags = x@templags <- value): partial argument match of
     'EXP' to 'EXPR'
    [<-,Xt0-character-missing: warning in switch(EXP = i, X00 = x@X00 <-
     value, sigma2X00 = x@sigma2X00 <- value, AR0 = x@AR0 <- value,
     sigma2N0 = x@sigma2N0 <- value): partial argument match of 'EXP' to
     'EXPR'
Flavor: r-devel-osx-x86_64-clang