CRAN Package Check Results for Package HMPTrees

Last updated on 2015-08-03 14:47:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 0.82 17.78 18.60 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 0.78 17.62 18.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 36.55 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 34.06 NOTE
r-devel-osx-x86_64-clang 1.2 36.25 NOTE
r-devel-windows-ix86+x86_64 1.2 4.00 32.00 36.00 NOTE
r-patched-linux-x86_64 1.2 0.87 17.87 18.74 NOTE
r-patched-solaris-sparc 1.2 245.20 NOTE
r-patched-solaris-x86 1.2 49.70 NOTE
r-release-linux-x86_64 1.2 0.82 17.98 18.80 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 5.00 34.00 39.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 4.00 41.00 45.00 NOTE

Check Details

Version: 1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘HMP’ ‘doParallel’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    createAndPlot: no visible global function definition for ‘par’
    createAndPlot: no visible global function definition for ‘layout’
    displayLegend: no visible global function definition for ‘palette’
    displayLegend: no visible global function definition for ‘plot’
    displayLegend: no visible global function definition for ‘legend’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    getBranchSizes: no visible global function definition for ‘palette’
    plotTree: no visible global function definition for ‘par’
    plotTree: no visible global function definition for ‘plot’
    plotTreeDataMDS: no visible global function definition for ‘rainbow’
    plotTreeDataMDS: no visible global function definition for ‘cmdscale’
    plotTreeDataMDS: no visible global function definition for ‘dist’
    plotTreeDataMDS: no visible global function definition for ‘plot’
    plotTreeDataMDS: no visible global function definition for ‘text’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
    Undefined global functions or variables:
     %dopar% DM.MoM Dirichlet.multinomial cmdscale collapse.singles
     dirmult dist foreach icount layout legend makeCluster palette par
     plot rainbow read.tree registerDoParallel stopCluster text
    Consider adding
     importFrom("grDevices", "palette", "rainbow")
     importFrom("graphics", "layout", "legend", "par", "plot", "text")
     importFrom("stats", "cmdscale", "dist")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
    Undefined global functions or variables:
     %dopar% DM.MoM Dirichlet.multinomial collapse.singles dirmult foreach
     icount makeCluster read.tree registerDoParallel stopCluster
Flavor: r-devel-osx-x86_64-clang

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64