CRAN Package Check Results for Package HMPTrees

Last updated on 2015-07-06 23:47:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 0.81 18.02 18.82 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 0.79 17.76 18.55 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 35.59 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 34.40 NOTE
r-devel-osx-x86_64-clang 1.2 38.07 NOTE
r-devel-windows-ix86+x86_64 1.2 6.00 33.00 39.00 NOTE
r-patched-linux-x86_64 1.2 0.87 17.87 18.74 NOTE
r-patched-solaris-sparc 1.2 256.20 NOTE
r-patched-solaris-x86 1.2 49.80 NOTE
r-release-linux-x86_64 1.2 0.83 17.99 18.82 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 4.00 31.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 5.00 39.00 44.00 NOTE

Check Details

Version: 1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘HMP’ ‘doParallel’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    createAndPlot: no visible global function definition for ‘par’
    createAndPlot: no visible global function definition for ‘layout’
    displayLegend: no visible global function definition for ‘palette’
    displayLegend: no visible global function definition for ‘plot’
    displayLegend: no visible global function definition for ‘legend’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    getBranchSizes: no visible global function definition for ‘palette’
    plotTree: no visible global function definition for ‘par’
    plotTree: no visible global function definition for ‘plot’
    plotTreeDataMDS: no visible global function definition for ‘rainbow’
    plotTreeDataMDS: no visible global function definition for ‘cmdscale’
    plotTreeDataMDS: no visible global function definition for ‘dist’
    plotTreeDataMDS: no visible global function definition for ‘plot’
    plotTreeDataMDS: no visible global function definition for ‘text’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
    Undefined global functions or variables:
     %dopar% DM.MoM Dirichlet.multinomial cmdscale collapse.singles
     dirmult dist foreach icount layout legend makeCluster palette par
     plot rainbow read.tree registerDoParallel stopCluster text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
    Undefined global functions or variables:
     %dopar% DM.MoM Dirichlet.multinomial collapse.singles dirmult foreach
     icount makeCluster read.tree registerDoParallel stopCluster
Flavor: r-devel-osx-x86_64-clang

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64