CRAN Package Check Results for Package HSAUR

Last updated on 2014-04-23 12:48:19.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-3 1.80 77.12 78.92 OK
r-devel-linux-x86_64-debian-gcc 1.3-3 1.75 76.80 78.55 OK
r-devel-linux-x86_64-fedora-clang 1.3-3 177.92 OK
r-devel-linux-x86_64-fedora-gcc 1.3-3 160.61 OK
r-devel-osx-x86_64-clang 1.3-3 126.99 NOTE
r-devel-osx-x86_64-gcc 1.3-3 WARN
r-devel-windows-ix86+x86_64 1.3-3 6.00 148.00 154.00 OK
r-patched-linux-x86_64 1.3-3 1.76 75.83 77.58 OK
r-patched-solaris-sparc 1.3-3 1053.80 OK
r-patched-solaris-x86 1.3-3 257.20 OK
r-release-linux-ix86 1.3-3 4.00 216.00 220.00 OK
r-release-linux-x86_64 1.3-3 1.92 76.52 78.44 OK
r-release-osx-x86_64-mavericks 1.3-3 WARN
r-release-windows-ix86+x86_64 1.3-3 7.00 147.00 154.00 OK
r-oldrel-windows-ix86+x86_64 1.3-3 7.00 139.00 146.00 OK

Check Details

Version: 1.3-3
Check: re-building of vignette outputs
Result: NOTE
    Warnings in re-building vignettes:
     Warning: file name 'figures/HSAUR-ALDI-plot-BtheB' is not portable
     Warning: file name 'figures/HSAUR-ALDII-plot1' is not portable
     Warning: file name 'figures/HSAUR-ALDII-plot2' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-weightgain-plot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-weightgain-iplot-nice' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-foster-plot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-foster-tukeyHSDplot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-skulls-fig' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-scatter' is not portable
     Warning: file name 'figures/HSAUR-CA-planet-ss' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-plot' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-scatter' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-scatterclust' is not portable
     Warning: file name 'figures/HSAUR-CI-roomwidth-plot' is not portable
     Warning: file name 'figures/HSAUR-DE-kernel-figs' is not portable
     Warning: file name 'figures/HSAUR-DE-x-bumps' is not portable
     Warning: file name 'figures/HSAUR-DE-epakernel-fig' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-density' is not portable
     Warning: file name 'figures/HSAUR-DE-CYGOB1-contour' is not portable
     Warning: file name 'figures/HSAUR-DE-CYGOB1-persp' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-2Dplot' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-boot-plot' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue-sales' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue-sales-shading' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-country-plot' is not portable
     Warning: file name 'figures/HSAUR-GLM-plasma-plot' is not portable
     Warning: file name 'figures/HSAUR-GLM-plasma-bubble' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-fitted1' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-fitted2' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-plot2' is not portable
     Warning: file name 'figures/HSAUR-MA-smoking-OR-plot' is not portable
     Warning: file name 'figures/HSAUR-BCG-Latitude-plot' is not portable
     Warning: file name 'figures/HSAUR-MA-funnel-ex' is not portable
     Warning: file name 'figures/HSAUR-MA-smoking-funnel' is not portable
     Warning: file name 'figures/HSAUR-MDS-watervoles-plot' is not portable
     Warning: file name 'figures/HSAUR-MDS-watervoles-mst' is not portable
     Warning: file name 'figures/HSAUR-MDS-voting-plot' is not portable
     Warning: file name 'figures/HSAUR-MDS-voting-Shepard' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-boxplots' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-scatterplots' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-lmplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-residplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-qqplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-cook' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-scatter' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-pca-plot' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-PCscatter' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlonscore' is not portable
     Warning: file name 'figures/HSAUR-RP-Forbes-initial' is not portable
     Warning: file name 'figures/HSAUR-RP-Forbes-plot' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-plot' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-baggplot' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-ctree-plot' is not portable
     Warning: file name 'figures/HSAUR-SI-roomwidth-boxplot' is not portable
     Warning: file name 'figures/HSAUR-SI-wavese-boxplot' is not portable
     Warning: file name 'figures/HSAUR-SI-water-plot' is not portable
     Warning: file name 'figures/HSAUR-SI-assoc-plot' is not portable
     Warning: file name 'figures/HSAUR-SA-glioma-KM' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-plot' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-zph-plot' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-Martingal' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-ctree-plot' is not portable
Flavor: r-devel-osx-x86_64-clang

Version: 1.3-3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘ipred’ ‘lme4’ ‘party’ ‘randomForest’ ‘vcd’
Flavor: r-devel-osx-x86_64-gcc

Version: 1.3-3
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘Ch_analysing_longitudinal_dataI.Rnw’
     ...
    + if (book) {
    + return(paste("Chapter~\\\\ref{", ch[1], "}", .... [TRUNCATED]
    
    > library("Matrix")
    
    > library("lme4")
    
     When sourcing 'Ch_analysing_longitudinal_dataI.R':
    Error: there is no package called 'lme4'
    Execution halted
    when running code in ‘Ch_recursive_partitioning.Rnw’
     ...
    > ch <- function(x, book = TRUE) {
    + ch <- refs[which(refs[, 1] == x), ]
    + if (book) {
    + return(paste("Chapter~\\\\ref{", ch[1], "}", .... [TRUNCATED]
    
    > library("vcd")
    
     When sourcing 'Ch_recursive_partitioning.R':
    Error: there is no package called 'vcd'
    Execution halted
    when running code in ‘Ch_simple_inference.Rnw’
     ...
    > ch <- function(x, book = TRUE) {
    + ch <- refs[which(refs[, 1] == x), ]
    + if (book) {
    + return(paste("Chapter~\\\\ref{", ch[1], "}", .... [TRUNCATED]
    
    > library("vcd")
    
     When sourcing 'Ch_simple_inference.R':
    Error: there is no package called 'vcd'
    Execution halted
    when running code in ‘Ch_survival_analysis.Rnw’
     ...
    > x <- library("survival")
    Loading required package: splines
    
    > x <- library("coin")
    
    > x <- library("party")
    
     When sourcing 'Ch_survival_analysis.R':
    Error: there is no package called 'party'
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 1.3-3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: HSAUR
    
    Error: processing vignette 'Ch_analysing_longitudinal_dataI.Rnw' failed with diagnostics:
     chunk 2 (label = ALDI-setup)
    Error in library("lme4") : there is no package called 'lme4'
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 1.3-3
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘ipred’ ‘lme4’ ‘party’ ‘vcd’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.3-3
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    111f83bb/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks