CRAN Package Check Results for Package HSAUR2

Last updated on 2014-04-24 19:54:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-9 1.92 331.98 333.91 OK
r-devel-linux-x86_64-debian-gcc 1.1-9 1.78 112.23 114.00 OK
r-devel-linux-x86_64-fedora-clang 1.1-9 260.41 OK
r-devel-linux-x86_64-fedora-gcc 1.1-9 250.70 OK
r-devel-osx-x86_64-clang 1.1-9 163.88 NOTE
r-devel-osx-x86_64-gcc 1.1-9 WARN
r-devel-windows-ix86+x86_64 1.1-9 7.00 340.00 347.00 OK
r-patched-linux-x86_64 1.1-9 1.74 114.06 115.80 OK
r-patched-solaris-sparc 1.1-9 1530.90 OK
r-patched-solaris-x86 1.1-9 358.50 OK
r-release-linux-ix86 1.1-9 4.00 224.00 228.00 OK
r-release-linux-x86_64 1.1-9 1.77 112.82 114.60 OK
r-release-osx-x86_64-mavericks 1.1-9 WARN
r-release-osx-x86_64-snowleopard 1.1-9 WARN
r-release-windows-ix86+x86_64 1.1-9 6.00 208.00 214.00 OK
r-oldrel-windows-ix86+x86_64 1.1-9 8.00 202.00 210.00 OK

Check Details

Version: 1.1-9
Check: re-building of vignette outputs
Result: NOTE
    Warnings in re-building vignettes:
     Warning: file name 'figures/HSAUR-ALDI-plot-BtheB' is not portable
     Warning: file name 'figures/HSAUR-ALDI-qqnorm-BtheB' is not portable
     Warning: file name 'figures/HSAUR-ALDI-dropout' is not portable
     Warning: file name 'figures/HSAUR-ALDII-plot1' is not portable
     Warning: file name 'figures/HSAUR-ALDII-plot2' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-weightgain-plot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-weightgain-iplot-nice' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-foster-plot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-foster-tukeyHSDplot' is not portable
     Warning: file name 'figures/HSAUR-ANOVA-skulls-fig' is not portable
     Warning: file name 'figures/HSAUR-CA-pottery-distplot' is not portable
     Warning: file name 'figures/HSAUR-CA-pottery-hclust' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-scatter' is not portable
     Warning: file name 'figures/HSAUR-CA-planet-ss' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-plot' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-scatter' is not portable
     Warning: file name 'figures/HSAUR-CA-planets-mclust-scatterclust' is not portable
     Warning: file name 'figures/HSAUR-CI-roomwidth-plot' is not portable
     Warning: file name 'figures/HSAUR-DE-kernel-figs' is not portable
     Warning: file name 'figures/HSAUR-DE-x-bumps' is not portable
     Warning: file name 'figures/HSAUR-DE-epakernel-fig' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-density' is not portable
     Warning: file name 'figures/HSAUR-DE-CYGOB1-contour' is not portable
     Warning: file name 'figures/HSAUR-DE-CYGOB1-persp' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-2Dplot' is not portable
     Warning: file name 'figures/HSAUR-DE-faithful-boot-plot' is not portable
     Warning: file name 'figures/HSAUR-GAM-men1500m-plot' is not portable
     Warning: file name 'figures/HSAUR-GAM-men1500m-lm' is not portable
     Warning: file name 'figures/HSAUR-GAM-men1500m-smooth' is not portable
     Warning: file name 'figures/HSAUR-GAM-men1500m-quad' is not portable
     Warning: file name 'figures/HSAUR-GAM-USairpollution-boostplot' is not portable
     Warning: file name 'figures/HSAUR-GAM-USairpollution-residplot' is not portable
     Warning: file name 'figures/HSAUR-GAM-kyphosis-plot' is not portable
     Warning: file name 'figures/HSAUR-GAM-kyphosis-gamplot' is not portable
     Warning: file name 'figures/HSAUR-DAGD-USmelanoma-histbox' is not portable
     Warning: file name 'figures/HSAUR-DAGD-USmelanoma-boxocean' is not portable
     Warning: file name 'figures/HSAUR-DAGD-USmelanoma-dens' is not portable
     Warning: file name 'figures/HSAUR-DAGD-USmelanoma-xy' is not portable
     Warning: file name 'figures/HSAUR-DAGD-USmelanoma-lat' is not portable
     Warning: file name 'figures/HSAUR-DAGD-CHFLS-happy' is not portable
     Warning: file name 'figures/HSAUR-DAGD-CHFLS-health_happy' is not portable
     Warning: file name 'figures/HSAUR-DAGD-CHFLS-happy_income' is not portable
     Warning: file name 'figures/HSAUR-DAGD-CHFLS-RAincome3' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue-sales' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-marketvalue-sales-shading' is not portable
     Warning: file name 'figures/HSAUR-AItR-Forbes2000-country-plot' is not portable
     Warning: file name 'figures/HSAUR-GLM-plasma-plot' is not portable
     Warning: file name 'figures/HSAUR-GLM-plasma-bubble' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-fitted1' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-fitted2' is not portable
     Warning: file name 'figures/HSAUR-GLM-role-plot2' is not portable
     Warning: file name 'figures/HSAUR-MA-smoking-OR-plot' is not portable
     Warning: file name 'figures/HSAUR-BCG-Latitude-plot' is not portable
     Warning: file name 'figures/HSAUR-MA-funnel-ex' is not portable
     Warning: file name 'figures/HSAUR-MA-smoking-funnel' is not portable
     Warning: file name 'figures/HSAUR-MDS-watervoles-plot' is not portable
     Warning: file name 'figures/HSAUR-MDS-watervoles-mst' is not portable
     Warning: file name 'figures/HSAUR-MDS-voting-plot' is not portable
     Warning: file name 'figures/HSAUR-MDS-voting-Shepard' is not portable
     Warning: file name 'figures/HSAUR-MLR-hubble-plot' is not portable
     Warning: file name 'figures/HSAUR-MLR-hubble-lmplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-boxplots' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-scatterplots' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-lmplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-residplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-qqplot' is not portable
     Warning: file name 'figures/HSAUR-MLR-clouds-cook' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-scatter' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-scatter2' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-pca-plot' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlon-biplot' is not portable
     Warning: file name 'figures/HSAUR-PCA-heptathlonscore' is not portable
     Warning: file name 'figures/HSAUR-RP-bodyfat-plot' is not portable
     Warning: file name 'figures/HSAUR-RP-bodyfat-pruneplot' is not portable
     Warning: file name 'figures/HSAUR-RP-bodyfat-predict' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-plot' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-baggplot' is not portable
     Warning: file name 'figures/HSAUR-RP-bodyfat-ctree-plot' is not portable
     Warning: file name 'figures/HSAUR-RP-glaucoma-ctree-plot' is not portable
     Warning: file name 'figures/HSAUR-SI-roomwidth-boxplot' is not portable
     Warning: file name 'figures/HSAUR-SI-wavese-boxplot' is not portable
     Warning: file name 'figures/HSAUR-SI-water-plot' is not portable
     Warning: file name 'figures/HSAUR-SI-assoc-plot' is not portable
     Warning: file name 'figures/HSAUR-SIMC-alpha-data-figure' is not portable
     Warning: file name 'figures/HSAUR-SIMC-alpha-confint-plot' is not portable
     Warning: file name 'figures/HSAUR-SIMC-trees-plot' is not portable
     Warning: file name 'figures/HSAUR-SIMC-clouds-lmplot' is not portable
     Warning: file name 'figures/HSAUR-SA-glioma-KM' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-plot' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-zph-plot' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-Martingal' is not portable
     Warning: file name 'figures/HSAUR-SA-GBSG2-ctree-plot' is not portable
Flavor: r-devel-osx-x86_64-clang

Version: 1.1-9
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘alr3’ ‘lme4’ ‘party’ ‘multcomp’ ‘sandwich’ ‘mboost’ ‘partykit’ ‘tm’
Flavor: r-devel-osx-x86_64-gcc

Version: 1.1-9
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘Ch_analysing_longitudinal_dataI.Rnw’
     ...
    
    > book <- FALSE
    
    > library("Matrix")
    
    > library("lme4")
    
     When sourcing 'Ch_analysing_longitudinal_dataI.R':
    Error: there is no package called 'lme4'
    Execution halted
    when running code in ‘Ch_analysing_longitudinal_dataII.Rnw’
     ...
    trtProgabide -0.1527 0.1594 -0.958 0.17111 -0.892
    
    Estimated Scale Parameter: 5.09
    ...
    
    > library("lme4")
    
     When sourcing 'Ch_analysing_longitudinal_dataII.R':
    Error: there is no package called 'lme4'
    Execution halted
    when running code in ‘Ch_analysis_of_variance.Rnw’
     ...
    + lattice.options(default.theme = function() standard.theme("pdf",
    + color = .... [TRUNCATED]
    
    > book <- FALSE
    
    > library("tm")
    
     When sourcing 'Ch_analysis_of_variance.R':
    Error: there is no package called 'tm'
    Execution halted
    when running code in ‘Ch_gam.Rnw’
     ...
    
    > library("mgcv")
    Loading required package: nlme
    This is mgcv 1.7-28. For overview type 'help("mgcv-package")'.
    
    > library("mboost")
    
     When sourcing 'Ch_gam.R':
    Error: there is no package called 'mboost'
    Execution halted
    when running code in ‘Ch_graphical_display.Rnw’
     ...
    USA & 20 & 22 & 28 & 33 & 37 \\
    \hline
    \end{longtable}
    \end{center}
    
    > data("banknote", package = "alr3")
    
     When sourcing 'Ch_graphical_display.R':
    Error: there is no package called 'alr3'
    Execution halted
    when running code in ‘Ch_recursive_partitioning.Rnw’
     ...
    
    > library("randomForest")
    randomForest 4.6-7
    Type rfNews() to see new features/changes/bug fixes.
    
    > library("party")
    
     When sourcing 'Ch_recursive_partitioning.R':
    Error: there is no package called 'party'
    Execution halted
    when running code in ‘Ch_simultaneous_inference.Rnw’
     ...
    + lattice.options(default.theme = function() standard.theme("pdf",
    + color = .... [TRUNCATED]
    
    > book <- FALSE
    
    > library("multcomp")
    
     When sourcing 'Ch_simultaneous_inference.R':
    Error: there is no package called 'multcomp'
    Execution halted
    when running code in ‘Ch_survival_analysis.Rnw’
     ...
    > x <- library("survival")
    Loading required package: splines
    
    > x <- library("coin")
    
    > x <- library("party")
    
     When sourcing 'Ch_survival_analysis.R':
    Error: there is no package called 'party'
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 1.1-9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: HSAUR2
    Loading required package: tools
    
    Error: processing vignette 'Ch_analysing_longitudinal_dataI.Rnw' failed with diagnostics:
     chunk 3 (label = ALDI-setup)
    Error in library("lme4") : there is no package called 'lme4'
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 1.1-9
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘lme4’ ‘party’ ‘multcomp’ ‘partykit’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-9
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘Ch_analysing_longitudinal_dataI.Rnw’
     ...
    
    > book <- FALSE
    
    > library("Matrix")
    
    > library("lme4")
    
     When sourcing 'Ch_analysing_longitudinal_dataI.R':
    Error: there is no package called 'lme4'
    Execution halted
    when running code in ‘Ch_analysing_longitudinal_dataII.Rnw’
     ...
    trtProgabide -0.1527 0.1594 -0.958 0.17111 -0.892
    
    Estimated Scale Parameter: 5.09
    ...
    
    > library("lme4")
    
     When sourcing 'Ch_analysing_longitudinal_dataII.R':
    Error: there is no package called 'lme4'
    Execution halted
    when running code in ‘Ch_recursive_partitioning.Rnw’
     ...
    
    > library("randomForest")
    randomForest 4.6-7
    Type rfNews() to see new features/changes/bug fixes.
    
    > library("party")
    
     When sourcing 'Ch_recursive_partitioning.R':
    Error: there is no package called 'party'
    Execution halted
    when running code in ‘Ch_simultaneous_inference.Rnw’
     ...
    + lattice.options(default.theme = function() standard.theme("pdf",
    + color = .... [TRUNCATED]
    
    > book <- FALSE
    
    > library("multcomp")
    
     When sourcing 'Ch_simultaneous_inference.R':
    Error: there is no package called 'multcomp'
    Execution halted
    when running code in ‘Ch_survival_analysis.Rnw’
     ...
    > x <- library("survival")
    Loading required package: splines
    
    > x <- library("coin")
    
    > x <- library("party")
    
     When sourcing 'Ch_survival_analysis.R':
    Error: there is no package called 'party'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-9
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    8140f6f/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘multcomp’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.1-9
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘Ch_analysing_longitudinal_dataI.Rnw’
     ...
    > library("Matrix")
    
    > library("lme4")
    Loading required package: lattice
    
    > library("multcomp")
    
     When sourcing 'Ch_analysing_longitudinal_dataI.R':
    Error: there is no package called 'multcomp'
    Execution halted
    when running code in ‘Ch_simultaneous_inference.Rnw’
     ...
    + lattice.options(default.theme = function() standard.theme("pdf",
    + color = .... [TRUNCATED]
    
    > book <- FALSE
    
    > library("multcomp")
    
     When sourcing 'Ch_simultaneous_inference.R':
    Error: there is no package called 'multcomp'
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.1-9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: HSAUR2
    Loading required package: tools
    Loading required package: lattice
    
    Error: processing vignette 'Ch_analysing_longitudinal_dataI.Rnw' failed with diagnostics:
     chunk 3 (label = ALDI-setup)
    Error in library("multcomp") : there is no package called 'multcomp'
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard