CRAN Package Check Results for Package HapEstXXR

Last updated on 2015-08-04 23:48:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-8 2.98 19.40 22.38 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-8 4.04 19.34 23.38 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-8 42.68 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-8 40.77 NOTE
r-devel-osx-x86_64-clang 0.1-8 37.35 OK
r-devel-windows-ix86+x86_64 0.1-8 23.00 38.00 61.00 NOTE
r-patched-linux-x86_64 0.1-8 4.42 18.73 23.15 OK
r-patched-solaris-sparc 0.1-8 277.40 OK
r-patched-solaris-x86 0.1-8 62.00 OK
r-release-linux-x86_64 0.1-8 4.01 19.52 23.52 OK
r-release-osx-x86_64-mavericks 0.1-8 OK
r-release-windows-ix86+x86_64 0.1-8 32.00 34.00 66.00 OK
r-oldrel-windows-ix86+x86_64 0.1-8 36.00 41.00 77.00 OK

Check Details

Version: 0.1-8
Check: R code for possible problems
Result: NOTE
    catt: no visible global function definition for ‘prop.trend.test’
    maf: no visible global function definition for ‘pchisq’
    makeHaploviewInputFile: no visible global function definition for
     ‘write.table’
    msr.binomial.haplotype.test.adjusted: no visible global function
     definition for ‘glm’
    msr.binomial.haplotype.test.adjusted: no visible global function
     definition for ‘anova’
    msr.binomial.haplotype.test.adjusted: no visible global function
     definition for ‘AIC’
    msr.binomial.haplotype.test.adjusted: no visible global function
     definition for ‘coef’
    msr.binomial.haplotype.test.unadjusted: no visible global function
     definition for ‘glm’
    msr.binomial.haplotype.test.unadjusted: no visible global function
     definition for ‘anova’
    msr.binomial.haplotype.test.unadjusted: no visible global function
     definition for ‘AIC’
    msr.binomial.haplotype.test.unadjusted: no visible global function
     definition for ‘coef’
    msr.families.unadjusted: no visible global function definition for
     ‘pchisq’
    msr.gaussian.haplotype.test.adjusted: no visible global function
     definition for ‘glm’
    msr.gaussian.haplotype.test.adjusted: no visible global function
     definition for ‘anova’
    msr.gaussian.haplotype.test.adjusted: no visible global function
     definition for ‘AIC’
    msr.gaussian.haplotype.test.adjusted: no visible global function
     definition for ‘coef’
    msr.gaussian.haplotype.test.unadjusted: no visible global function
     definition for ‘glm’
    msr.gaussian.haplotype.test.unadjusted: no visible global function
     definition for ‘anova’
    msr.gaussian.haplotype.test.unadjusted: no visible global function
     definition for ‘AIC’
    msr.gaussian.haplotype.test.unadjusted: no visible global function
     definition for ‘coef’
    multi.snp.test: no visible global function definition for ‘glm’
    multi.snp.test: no visible global function definition for ‘anova’
    multi.snp.test: no visible global function definition for ‘coef’
    read.data: no visible global function definition for ‘read.table’
    read.haploview: no visible global function definition for ‘read.table’
    single.haplotype.test.binomial: no visible global function definition
     for ‘AIC’
    single.haplotype.test.binomial: no visible global function definition
     for ‘coefficients’
    single.haplotype.test.binomial: no visible global function definition
     for ‘qnorm’
    single.haplotype.test.families: no visible global function definition
     for ‘pchisq’
    single.haplotype.test.gaussian: no visible global function definition
     for ‘AIC’
    single.haplotype.test.gaussian: no visible global function definition
     for ‘coefficients’
    single.snp.test.binomial: no visible global function definition for
     ‘AIC’
    single.snp.test.binomial: no visible global function definition for
     ‘coef’
    single.snp.test.binomial: no visible global function definition for
     ‘qnorm’
    single.snp.test.casecohort.prentice: no visible global function
     definition for ‘as.formula’
    single.snp.test.gaussian: no visible global function definition for
     ‘AIC’
    single.snp.test.gaussian: no visible global function definition for
     ‘coef’
    single.snp.test.gaussian: no visible global function definition for
     ‘residuals’
    Undefined global functions or variables:
     AIC anova as.formula coef coefficients glm pchisq prop.trend.test
     qnorm read.table residuals write.table
    Consider adding
     importFrom("stats", "AIC", "anova", "as.formula", "coef",
     "coefficients", "glm", "pchisq", "prop.trend.test", "qnorm",
     "residuals")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64