CRAN Package Check Results for Package Haplin

Last updated on 2015-09-01 06:48:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.5 3.82 53.64 57.46 NOTE
r-devel-linux-x86_64-debian-gcc 5.5 3.46 52.88 56.34 NOTE
r-devel-linux-x86_64-fedora-clang 5.5 116.40 NOTE
r-devel-linux-x86_64-fedora-gcc 5.5 108.50 NOTE
r-devel-osx-x86_64-clang 5.5 94.51 OK
r-devel-windows-ix86+x86_64 5.5 16.00 114.00 130.00 NOTE
r-patched-linux-x86_64 5.5 3.89 55.72 59.61 OK
r-patched-solaris-sparc 5.5 729.10 OK
r-patched-solaris-x86 5.5 151.50 OK
r-release-linux-x86_64 5.5 3.83 55.69 59.52 OK
r-release-osx-x86_64-mavericks 5.5 OK
r-release-windows-ix86+x86_64 5.5 14.00 90.00 104.00 OK
r-oldrel-windows-ix86+x86_64 5.5 20.00 109.00 129.00 OK

Check Details

Version: 5.5
Check: R code for possible problems
Result: NOTE
    coef.tri.glm: no visible global function definition for ‘summary.glm’
    convertPed: no visible global function definition for ‘read.table’
    convertPed: no visible global function definition for ‘write.table’
    f.HWE: no visible global function definition for ‘na.omit’
    f.HWE: no visible global function definition for ‘pchisq’
    f.QQconf: no visible global function definition for ‘runif’
    f.Rplot : .f.segments.rest: no visible global function definition for
     ‘segments’
    f.Rplot: no visible global function definition for ‘points’
    f.check.pars: no visible global function definition for ‘file_test’
    f.debug.pvalues: no visible global function definition for ‘pdf’
    f.debug.pvalues: no visible global function definition for ‘dev.off’
    f.debug.pvalues: no visible global function definition for ‘par’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘ecdf’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘plot’
    f.debug.pvalues : <anonymous>: no visible global function definition
     for ‘lines’
    f.debug.pvalues: no visible global function definition for
     ‘write.table’
    f.like.ratio: no visible global function definition for ‘anova’
    f.like.ratio: no visible global function definition for ‘pchisq’
    f.make.design: no visible global function definition for ‘model.matrix’
    f.make.design: no visible global function definition for ‘formula’
    f.plot.effects: no visible global function definition for ‘par’
    f.plot.effects: no visible global function definition for ‘strwidth’
    f.plot.effects: no visible global function definition for ‘plot’
    f.plot.effects: no visible global function definition for ‘axis’
    f.plot.effects: no visible global function definition for ‘mtext’
    f.plot.effects: no visible global function definition for ‘grey’
    f.plot.effects: no visible global function definition for ‘abline’
    f.plot.effects: no visible global function definition for ‘rect’
    f.post.chisq: no visible global function definition for ‘pchisq’
    f.posttest.score: no visible binding for global variable ‘coef’
    f.posttest.score: no visible global function definition for ‘pchisq’
    f.rand.geno: no visible global function definition for ‘rbinom’
    f.read.data: no visible global function definition for ‘read.table’
    f.scoretest: no visible global function definition for ‘pchisq’
    f.sel.haplos: no visible global function definition for ‘read.table’
    f.suest: no visible global function definition for ‘cov’
    f.suest : .f.test: no visible global function definition for ‘pchisq’
    f.suest: no visible global function definition for ‘par’
    f.suest: no visible global function definition for ‘hist’
    f.suest: no visible global function definition for ‘pairs’
    f.suest: no visible binding for global variable ‘hist’
    f.tri.glm: no visible global function definition for ‘formula’
    f.tri.glm: no visible global function definition for ‘glm’
    f.tri.glm: no visible binding for global variable ‘poisson’
    f.tri.glm: no visible global function definition for ‘predict’
    gwaaToHaplin: no visible global function definition for ‘read.table’
    haplin: no visible global function definition for ‘plot’
    haplinStrat: no visible global function definition for ‘write.table’
    haplinTDT: no visible global function definition for ‘plot’
    output: no visible global function definition for ‘capture.output’
    output: no visible global function definition for ‘jpeg’
    output: no visible global function definition for ‘plot’
    output: no visible global function definition for ‘dev.off’
    pQQ: no visible global function definition for ‘qbeta’
    pQQ: no visible global function definition for ‘approxfun’
    pQQ: no visible global function definition for ‘plot’
    pQQ: no visible global function definition for ‘approx’
    pQQ: no visible global function definition for ‘segments’
    pQQ: no visible global function definition for ‘lines’
    pQQ: no visible global function definition for ‘points’
    pQQ: no visible global function definition for ‘box’
    pQQ: no visible global function definition for ‘abline’
    pQQ: no visible global function definition for ‘text’
    pedToHaplin: no visible global function definition for ‘read.table’
    pedToHaplin: no visible global function definition for ‘write.table’
    plot.haplin: no visible global function definition for ‘par’
    plot.haplin: no visible global function definition for ‘png’
    plot.haplin: no visible global function definition for ‘jpeg’
    plot.haplin: no visible global function definition for ‘dev.off’
    plot.haplinTDT: no visible global function definition for ‘par’
    plot.haplinTDT: no visible global function definition for ‘png’
    plot.haplinTDT: no visible global function definition for ‘jpeg’
    plot.haplinTDT: no visible global function definition for ‘pdf’
    plot.haplinTDT: no visible global function definition for ‘plot’
    plot.haplinTDT: no visible global function definition for ‘dev.off’
    plot.haptable: no visible global function definition for ‘na.omit’
    plot.haptable: no visible global function definition for ‘par’
    plot.haptable: no visible global function definition for ‘png’
    plot.haptable: no visible global function definition for ‘jpeg’
    plot.haptable: no visible global function definition for ‘dev.off’
    plot.tdt: no visible global function definition for ‘plot’
    plot.tdt: no visible global function definition for ‘points’
    plot.tdt: no visible global function definition for ‘abline’
    plot.tdt: no visible global function definition for ‘legend’
    postTest: no visible binding for global variable ‘coef’
    prepPed: no visible global function definition for ‘write.table’
    print.suest: no visible global function definition for ‘str’
    snpPos: no visible global function definition for ‘read.table’
    snpPower : or.power: no visible global function definition for ‘pnorm’
    snpPower : or.power: no visible global function definition for ‘qnorm’
    snpSampleSize : or.power: no visible global function definition for
     ‘pnorm’
    snpSampleSize : or.power: no visible global function definition for
     ‘qnorm’
    snpSampleSize : upper.limit: no visible global function definition for
     ‘qnorm’
    snpSampleSize : <anonymous>: no visible global function definition for
     ‘uniroot’
    summary.tri.glm : .f.quant: no visible global function definition for
     ‘quantile’
    summary.tri.glm : <anonymous>: no visible global function definition
     for ‘median’
    tdt.basic: no visible global function definition for ‘pchisq’
    textlabel: no visible global function definition for ‘grey’
    textlabel: no visible global function definition for ‘strwidth’
    textlabel: no visible global function definition for ‘strheight’
    textlabel: no visible global function definition for ‘xy.coords’
    textlabel: no visible global function definition for ‘rect’
    textlabel: no visible global function definition for ‘text’
    Undefined global functions or variables:
     abline anova approx approxfun axis box capture.output coef cov
     dev.off ecdf file_test formula glm grey hist jpeg legend lines median
     model.matrix mtext na.omit pairs par pchisq pdf plot png pnorm points
     poisson predict qbeta qnorm quantile rbinom read.table rect runif
     segments str strheight strwidth summary.glm text uniroot write.table
     xy.coords
    Consider adding
     importFrom("grDevices", "dev.off", "grey", "jpeg", "pdf", "png",
     "xy.coords")
     importFrom("graphics", "abline", "axis", "box", "hist", "legend",
     "lines", "mtext", "pairs", "par", "plot", "points", "rect",
     "segments", "strheight", "strwidth", "text")
     importFrom("stats", "anova", "approx", "approxfun", "coef", "cov",
     "ecdf", "formula", "glm", "median", "model.matrix",
     "na.omit", "pchisq", "pnorm", "poisson", "predict", "qbeta",
     "qnorm", "quantile", "rbinom", "runif", "summary.glm",
     "uniroot")
     importFrom("utils", "capture.output", "file_test", "read.table", "str",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64