CRAN Package Check Results for Package HyPhy

Last updated on 2014-10-22 16:50:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.10 18.69 19.80 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.11 18.61 19.72 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 40.21 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 36.41 NOTE
r-devel-osx-x86_64-clang 1.0 40.26 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 32.00 37.00 NOTE
r-patched-linux-x86_64 1.0 1.30 19.13 20.42 NOTE
r-patched-solaris-sparc 1.0 226.10 NOTE
r-patched-solaris-x86 1.0 53.20 NOTE
r-release-linux-ix86 1.0 1.45 25.05 26.50 NOTE
r-release-linux-x86_64 1.0 1.08 19.10 20.18 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 ERROR
r-release-windows-ix86+x86_64 1.0 5.00 32.00 37.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 32.00 37.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘R.utils’ ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    requiprobable: no visible global function definition for ‘extract’
    requiprobable : make.tree: no visible global function definition for
     ‘extract’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'requiprobable.Rd':
     \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))
    
    Rd file 'rgenetree.Rd':
     \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard