CRAN Package Check Results for Package HyPhy

Last updated on 2014-04-25 05:47:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.20 19.08 20.28 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.12 18.74 19.87 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 39.99 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 37.88 NOTE
r-devel-osx-x86_64-clang 1.0 41.40 NOTE
r-devel-osx-x86_64-gcc 1.0 NOTE
r-devel-windows-ix86+x86_64 1.0 4.00 28.00 32.00 NOTE
r-patched-linux-x86_64 1.0 1.24 18.78 20.02 NOTE
r-patched-solaris-sparc 1.0 217.90 NOTE
r-patched-solaris-x86 1.0 53.50 NOTE
r-release-linux-ix86 1.0 2.00 36.00 38.00 NOTE
r-release-linux-x86_64 1.0 1.13 18.68 19.82 NOTE
r-release-osx-x86_64-mavericks 1.0 WARN
r-release-osx-x86_64-snowleopard 1.0 ERROR
r-release-windows-ix86+x86_64 1.0 5.00 30.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 31.00 35.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘R.utils’ ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'requiprobable.Rd':
     \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))
    
    Rd file 'rgenetree.Rd':
     \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    4179ddf/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: whether package can be installed
Result: ERROR
    Installation failed.
    See ‘/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/HyPhy.Rcheck/00install.out’ for details.
Flavor: r-release-osx-x86_64-snowleopard