CRAN Package Check Results for Package HyPhy

Last updated on 2017-05-24 22:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.50 23.62 25.13 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.50 23.18 24.68 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 44.97 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.0 43.53 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.0 5.00 44.00 49.00 NOTE
r-patched-linux-x86_64 1.0 1.49 23.24 24.73 NOTE
r-patched-solaris-sparc 1.0 262.80 NOTE
r-patched-solaris-x86 1.0 57.10 NOTE
r-release-linux-x86_64 1.0 1.46 22.74 24.20 NOTE
r-release-windows-ix86+x86_64 1.0 5.00 62.00 67.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 6.00 58.00 64.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘R.utils’ ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    requiprobable: no visible global function definition for ‘extract’
    requiprobable : make.tree: no visible global function definition for
     ‘extract’
    requiprobable : make.tree: no visible global function definition for
     ‘runif’
    rgenetree: no visible global function definition for ‘dbinom’
    rgenetree: no visible global function definition for ‘dnbinom’
    rgenetree: no visible global function definition for ‘runif’
    rgenetree: no visible global function definition for ‘rbinom’
    rgenetree: no visible global function definition for ‘rnbinom’
    Undefined global functions or variables:
     dbinom dnbinom extract rbinom rnbinom runif
    Consider adding
     importFrom("stats", "dbinom", "dnbinom", "rbinom", "rnbinom", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'requiprobable.Rd':
     \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))
    
    Rd file 'rgenetree.Rd':
     \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘R.utils’ ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    requiprobable: no visible global function definition for ‘extract’
    requiprobable : make.tree: no visible global function definition for
     ‘extract’
    requiprobable : make.tree: no visible global function definition for
     ‘runif’
    rgenetree: no visible global function definition for ‘dbinom’
    rgenetree: no visible global function definition for ‘dnbinom’
    rgenetree: no visible global function definition for ‘runif’
    rgenetree: no visible global function definition for ‘rbinom’
    rgenetree: no visible global function definition for ‘rnbinom’
    Undefined global functions or variables:
     dbinom dnbinom extract rbinom rnbinom runif
    Consider adding
     importFrom("stats", "dbinom", "dnbinom", "rbinom", "rnbinom", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'requiprobable.Rd':
     \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))
    
    Rd file 'rgenetree.Rd':
     \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc