CRAN Package Check Results for Package IPMpack

Last updated on 2015-05-28 19:47:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1 3.99 73.61 77.60 NOTE
r-devel-linux-x86_64-debian-gcc 2.1 3.87 72.15 76.02 NOTE
r-devel-linux-x86_64-fedora-clang 2.1 164.94 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1 147.90 NOTE
r-devel-osx-x86_64-clang 2.1 139.09 NOTE
r-devel-windows-ix86+x86_64 2.1 11.00 113.00 124.00 NOTE
r-patched-linux-x86_64 2.1 3.86 73.80 77.66 NOTE
r-patched-solaris-sparc 2.1 945.50 NOTE
r-patched-solaris-x86 2.1 200.70 NOTE
r-release-linux-x86_64 2.1 4.14 74.04 78.17 NOTE
r-release-osx-x86_64-mavericks 2.1 NOTE
r-release-osx-x86_64-snowleopard 2.1 ERROR
r-release-windows-ix86+x86_64 2.1 11.00 112.00 123.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1 14.00 119.00 133.00 NOTE

Check Details

Version: 2.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MCMCpack’ ‘mvtnorm’ ‘truncnorm’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1
Check: R code for possible problems
Result: NOTE
    .getListRegObjects: no visible global function definition for ‘rmvnorm’
    .getListRegObjectsFec: no visible global function definition for
     ‘rmvnorm’
    diagnosticsPmatrix: no visible global function definition for
     ‘dtruncnorm’
    sampleVitalRateObj: no visible global function definition for
     ‘rdirichlet’
    sampleVitalRateObj: no visible global function definition for ‘rmvnorm’
    simulateCarlina: no visible global function definition for ‘rmvnorm’
    growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
     function definition for ‘dtruncnorm’
    growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
     global function definition for ‘ptruncnorm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘fields’
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.1
Check: examples
Result: ERROR
    Running examples in ‘IPMpack-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: makeIPMmatrix
    > ### Title: Builds IPM matrices.
    > ### Aliases: makeIPMmatrix
    >
    > ### ** Examples
    >
    > dff <- generateData()
    > Pmatrix <- makeIPMPmatrix(
    + growObj = makeGrowthObj(dff),
    + survObj = makeSurvObj(dff),
    + nBigMatrix=20,
    + minSize = min(dff$size, na.rm = TRUE),
    + maxSize=max(dff$size, na.rm=TRUE))
    > dff$fec[dff$fec==0] <- NA
    > fv1 <- makeFecObj(dff, Formula = fec~size, Transform = "log")
    > Fmatrix <- makeIPMFmatrix(
    + fecObj = fv1,
    + nBigMatrix = 20,
    + minSize = min(dff$size, na.rm = TRUE),
    + maxSize = max(dff$size, na.rm = TRUE))
    > IPMmatrix <- makeIPMmatrix(Pmatrix,Fmatrix)
    > slotNames(IPMmatrix)
    [1] ".Data" "nDiscrete" "nEnvClass" "nBigMatrix"
    [5] "meshpoints" "env.index" "names.discrete"
    >
    > require(fields)
    Loading required package: fields
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘fields’
    > par(mfrow=c(2,2))
    > image.plot(IPMmatrix@meshpoints, IPMmatrix@meshpoints, t(Pmatrix),
    + xlab = "Size(t)",
    + ylab = "Size(t+1)",
    + main = "Survival/Growth Kernel")
    Error: could not find function "image.plot"
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard