CRAN Package Check Results for Package IPMpack

Last updated on 2015-07-04 17:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1 3.89 71.90 75.79 NOTE
r-devel-linux-x86_64-debian-gcc 2.1 3.80 73.01 76.81 NOTE
r-devel-linux-x86_64-fedora-clang 2.1 152.29 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1 146.86 NOTE
r-devel-osx-x86_64-clang 2.1 134.75 NOTE
r-devel-windows-ix86+x86_64 2.1 19.00 104.00 123.00 NOTE
r-patched-linux-x86_64 2.1 3.98 72.94 76.93 NOTE
r-patched-solaris-sparc 2.1 945.50 NOTE
r-patched-solaris-x86 2.1 197.10 NOTE
r-release-linux-x86_64 2.1 3.75 70.94 74.69 NOTE
r-release-osx-x86_64-mavericks 2.1 NOTE
r-release-windows-ix86+x86_64 2.1 15.00 109.00 124.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1 15.00 127.00 142.00 NOTE

Check Details

Version: 2.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MCMCpack’ ‘mvtnorm’ ‘truncnorm’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1
Check: R code for possible problems
Result: NOTE
    .alteredFit: no visible global function definition for ‘rnorm’
    .createFecObj: no visible global function definition for ‘rnorm’
    .createFecObj: no visible global function definition for ‘rbinom’
    .createGrowthObj: no visible global function definition for ‘rnorm’
    .createGrowthObj: no visible global function definition for ‘lm’
    .createGrowthObj: no visible global function definition for ‘new’
    .createSurvObj: no visible global function definition for ‘rnorm’
    .createSurvObj: no visible global function definition for ‘glm’
    .createSurvObj: no visible binding for global variable ‘binomial’
    .createSurvObj: no visible global function definition for ‘new’
    .deathDataAugment: no visible global function definition for ‘rnorm’
    .deathDataAugment: no visible global function definition for ‘sd’
    .fecPostCensus: no visible global function definition for ‘dnorm’
    .fecPostCensus: no visible global function definition for ‘predict’
    .fecPostCensusInteger: no visible global function definition for
     ‘dpois’
    .fecPostCensusInteger: no visible global function definition for
     ‘predict’
    .fecPostCensusInteger: no visible global function definition for
     ‘dnbinom’
    .fecPreCensus: no visible global function definition for ‘dnorm’
    .fecPreCensus: no visible global function definition for ‘predict’
    .fecPreCensusInteger: no visible global function definition for ‘dpois’
    .fecPreCensusInteger: no visible global function definition for
     ‘predict’
    .fecPreCensusInteger: no visible global function definition for
     ‘dnbinom’
    .fecRaw: no visible global function definition for ‘predict’
    .generateDataDiscrete: no visible global function definition for
     ‘rnorm’
    .generateDataDiscrete: no visible global function definition for
     ‘rbinom’
    .generateDataDiscrete: no visible global function definition for
     ‘quantile’
    .generateDataStoch: no visible global function definition for ‘rnorm’
    .generateDataStoch: no visible global function definition for ‘rbinom’
    .generateDataStoch: no visible global function definition for
     ‘quantile’
    .generateDataStoch: no visible global function definition for ‘runif’
    .getIPMoutput: no visible global function definition for ‘median’
    .getListRegObjects: no visible global function definition for ‘rmvnorm’
    .getListRegObjects: no visible global function definition for ‘vcov’
    .getListRegObjectsFec: no visible global function definition for
     ‘rmvnorm’
    .getListRegObjectsFec: no visible global function definition for ‘vcov’
    .offspringCum: no visible global function definition for ‘pnorm’
    .offspringCum: no visible global function definition for ‘predict’
    .plotResultsStochStruct: no visible global function definition for
     ‘par’
    .plotResultsStochStruct: no visible global function definition for
     ‘plot’
    .plotResultsStochStruct: no visible global function definition for
     ‘abline’
    .plotResultsStochStruct: no visible global function definition for ‘sd’
    .plotResultsStochStruct: no visible global function definition for
     ‘matplot’
    addPdfGrowthPic: no visible global function definition for ‘points’
    diagnosticsPmatrix: no visible global function definition for ‘par’
    diagnosticsPmatrix: no visible global function definition for ‘hist’
    diagnosticsPmatrix: no visible global function definition for ‘axis’
    diagnosticsPmatrix: no visible global function definition for ‘plot’
    diagnosticsPmatrix: no visible global function definition for ‘text’
    diagnosticsPmatrix: no visible global function definition for ‘arrows’
    diagnosticsPmatrix: no visible global function definition for ‘title’
    diagnosticsPmatrix: no visible global function definition for ‘abline’
    diagnosticsPmatrix: no visible global function definition for ‘points’
    diagnosticsPmatrix: no visible global function definition for ‘legend’
    diagnosticsPmatrix: no visible global function definition for
     ‘quantile’
    diagnosticsPmatrix: no visible global function definition for ‘predict’
    diagnosticsPmatrix: no visible global function definition for ‘mtext’
    diagnosticsPmatrix: no visible global function definition for ‘dnorm’
    diagnosticsPmatrix: no visible global function definition for
     ‘dtruncnorm’
    diagnosticsPmatrix: no visible global function definition for ‘dlnorm’
    generateData: no visible global function definition for ‘rnorm’
    generateData: no visible global function definition for ‘rbinom’
    generateData: no visible global function definition for ‘quantile’
    makeCompoundFmatrix: no visible global function definition for ‘new’
    makeCompoundPmatrix: no visible global function definition for ‘new’
    makeDiscreteTrans: no visible global function definition for ‘sd’
    makeDiscreteTrans: no visible global function definition for ‘glm’
    makeDiscreteTrans: no visible binding for global variable ‘binomial’
    makeDiscreteTrans: no visible global function definition for ‘new’
    makeDiscreteTransInteger: no visible global function definition for
     ‘glm’
    makeDiscreteTransInteger: no visible binding for global variable
     ‘binomial’
    makeDiscreteTransInteger: no visible global function definition for
     ‘new’
    makeEnvObj: no visible global function definition for ‘new’
    makeFecObj: no visible global function definition for ‘new’
    makeFecObj: no visible global function definition for ‘glm’
    makeFecObj: no visible global function definition for ‘lm’
    makeFecObjInteger: no visible global function definition for ‘new’
    makeFecObjInteger: no visible global function definition for ‘glm’
    makeGrowthObj: no visible global function definition for ‘lm’
    makeGrowthObj: no visible binding for global variable ‘na.omit’
    makeGrowthObj: no visible global function definition for ‘glm’
    makeGrowthObj: no visible global function definition for ‘new’
    makeIPMFmatrix: no visible global function definition for ‘runif’
    makeIPMFmatrix: no visible global function definition for ‘new’
    makeIPMPmatrix: no visible global function definition for ‘new’
    makeIPMPmatrix: no visible global function definition for ‘predict’
    makeIPMPmatrix: no visible global function definition for ‘dnorm’
    makeIntegerFmatrix: no visible global function definition for ‘runif’
    makeIntegerFmatrix: no visible global function definition for ‘new’
    makeIntegerPmatrix: no visible global function definition for ‘new’
    makeIntegerPmatrix: no visible global function definition for ‘predict’
    makeIntegerPmatrix: no visible global function definition for ‘dpois’
    makeIntegerPmatrix: no visible global function definition for ‘dnbinom’
    makeOffspringObj: no visible global function definition for ‘lm’
    makeOffspringObj: no visible binding for global variable ‘na.omit’
    makeOffspringObj: no visible global function definition for ‘glm’
    makeOffspringObj: no visible global function definition for ‘new’
    makeSurvObj: no visible global function definition for ‘glm’
    makeSurvObj: no visible binding for global variable ‘binomial’
    makeSurvObj: no visible global function definition for ‘new’
    makegrowthObjHossfeld: no visible global function definition for
     ‘optim’
    makegrowthObjHossfeld: no visible global function definition for ‘new’
    makegrowthObjHossfeld: no visible global function definition for ‘sd’
    picGrow: no visible global function definition for ‘plot’
    picGrow: no visible global function definition for ‘abline’
    picGrow: no visible global function definition for ‘points’
    picGrow: no visible global function definition for ‘predict’
    picGrow: no visible global function definition for ‘lines’
    picSurv: no visible global function definition for ‘plot’
    picSurv: no visible global function definition for ‘points’
    picSurv: no visible global function definition for ‘predict’
    plotGrowthModelComp: no visible global function definition for ‘plot’
    plotGrowthModelComp: no visible global function definition for ‘terms’
    plotGrowthModelComp: no visible global function definition for
     ‘predict’
    plotGrowthModelComp: no visible global function definition for ‘lines’
    plotGrowthModelComp: no visible global function definition for ‘legend’
    plotSurvModelComp: no visible global function definition for ‘plot’
    plotSurvModelComp: no visible global function definition for ‘terms’
    plotSurvModelComp: no visible global function definition for ‘lines’
    plotSurvModelComp: no visible global function definition for ‘legend’
    predictFutureDistribution: no visible global function definition for
     ‘plot’
    predictFutureDistribution: no visible global function definition for
     ‘points’
    predictFutureDistribution: no visible global function definition for
     ‘legend’
    sampleIPMOutput: no visible global function definition for ‘median’
    sampleVitalRateObj: no visible global function definition for
     ‘rdirichlet’
    sampleVitalRateObj: no visible global function definition for ‘rmvnorm’
    sampleVitalRateObj: no visible global function definition for ‘vcov’
    sampleVitalRateObj: no visible global function definition for ‘rnorm’
    sampleVitalRateObj: no visible global function definition for
     ‘coefficients’
    simulateCarlina: no visible global function definition for ‘rnorm’
    simulateCarlina: no visible global function definition for ‘rmvnorm’
    simulateCarlina: no visible global function definition for ‘runif’
    simulateCarlina: no visible global function definition for ‘var’
    sizeToAge: no visible global function definition for ‘median’
    timeToSize: no visible global function definition for ‘par’
    timeToSize: no visible global function definition for ‘plot’
    timeToSize: no visible global function definition for ‘points’
    timeToSize: no visible global function definition for ‘legend’
    timeToSize: no visible global function definition for ‘abline’
    timeToSize: no visible global function definition for ‘contour’
    growth,numeric-numeric-data.frame-growthObj: no visible global function
     definition for ‘predict’
    growth,numeric-numeric-data.frame-growthObj: no visible global function
     definition for ‘dnorm’
    growth,numeric-numeric-data.frame-growthObjDeclineVar: no visible
     global function definition for ‘dnorm’
    growth,numeric-numeric-data.frame-growthObjHossfeld: no visible global
     function definition for ‘dnorm’
    growth,numeric-numeric-data.frame-growthObjIncr: no visible global
     function definition for ‘predict’
    growth,numeric-numeric-data.frame-growthObjIncr: no visible global
     function definition for ‘dnorm’
    growth,numeric-numeric-data.frame-growthObjIncrDeclineVar: no visible
     global function definition for ‘dnorm’
    growth,numeric-numeric-data.frame-growthObjLogIncr: no visible global
     function definition for ‘predict’
    growth,numeric-numeric-data.frame-growthObjLogIncr: no visible global
     function definition for ‘dlnorm’
    growth,numeric-numeric-data.frame-growthObjLogIncrDeclineVar: no
     visible global function definition for ‘dlnorm’
    growth,numeric-numeric-data.frame-growthObjNegBin: no visible global
     function definition for ‘predict’
    growth,numeric-numeric-data.frame-growthObjNegBin: no visible global
     function definition for ‘dnbinom’
    growth,numeric-numeric-data.frame-growthObjPois: no visible global
     function definition for ‘predict’
    growth,numeric-numeric-data.frame-growthObjPois: no visible global
     function definition for ‘dpois’
    growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
     function definition for ‘dtruncnorm’
    growthCum,numeric-numeric-data.frame-growthObj: no visible global
     function definition for ‘predict’
    growthCum,numeric-numeric-data.frame-growthObj: no visible global
     function definition for ‘pnorm’
    growthCum,numeric-numeric-data.frame-growthObjDeclineVar: no visible
     global function definition for ‘pnorm’
    growthCum,numeric-numeric-data.frame-growthObjHossfeld: no visible
     global function definition for ‘pnorm’
    growthCum,numeric-numeric-data.frame-growthObjIncr: no visible global
     function definition for ‘predict’
    growthCum,numeric-numeric-data.frame-growthObjIncr: no visible global
     function definition for ‘pnorm’
    growthCum,numeric-numeric-data.frame-growthObjIncrDeclineVar: no
     visible global function definition for ‘pnorm’
    growthCum,numeric-numeric-data.frame-growthObjLogIncr: no visible
     global function definition for ‘predict’
    growthCum,numeric-numeric-data.frame-growthObjLogIncr: no visible
     global function definition for ‘plnorm’
    growthCum,numeric-numeric-data.frame-growthObjLogIncrDeclineVar: no
     visible global function definition for ‘plnorm’
    growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
     global function definition for ‘ptruncnorm’
    surv,numeric-data.frame-survObj: no visible global function definition
     for ‘predict’
    surv,numeric-data.frame-survObjOverDisp: no visible global function
     definition for ‘predict’
    Undefined global functions or variables:
     abline arrows axis binomial coefficients contour dlnorm dnbinom dnorm
     dpois dtruncnorm glm hist legend lines lm matplot median mtext
     na.omit new optim par plnorm plot pnorm points predict ptruncnorm
     quantile rbinom rdirichlet rmvnorm rnorm runif sd terms text title
     var vcov
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.1
Check: R code for possible problems
Result: NOTE
    .getListRegObjects: no visible global function definition for ‘rmvnorm’
    .getListRegObjectsFec: no visible global function definition for
     ‘rmvnorm’
    diagnosticsPmatrix: no visible global function definition for
     ‘dtruncnorm’
    sampleVitalRateObj: no visible global function definition for
     ‘rdirichlet’
    sampleVitalRateObj: no visible global function definition for ‘rmvnorm’
    simulateCarlina: no visible global function definition for ‘rmvnorm’
    growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
     function definition for ‘dtruncnorm’
    growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
     global function definition for ‘ptruncnorm’
    Undefined global functions or variables:
     dtruncnorm ptruncnorm rdirichlet rmvnorm
Flavor: r-devel-osx-x86_64-clang

Version: 2.1
Check: R code for possible problems
Result: NOTE
    .getListRegObjects: no visible global function definition for ‘rmvnorm’
    .getListRegObjectsFec: no visible global function definition for
     ‘rmvnorm’
    diagnosticsPmatrix: no visible global function definition for
     ‘dtruncnorm’
    sampleVitalRateObj: no visible global function definition for
     ‘rdirichlet’
    sampleVitalRateObj: no visible global function definition for ‘rmvnorm’
    simulateCarlina: no visible global function definition for ‘rmvnorm’
    growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
     function definition for ‘dtruncnorm’
    growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
     global function definition for ‘ptruncnorm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64