CRAN Package Check Results for Package IPMpack

Last updated on 2014-04-24 11:48:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1 5.07 91.33 96.40 OK
r-devel-linux-x86_64-debian-gcc 2.1 4.98 90.18 95.16 OK
r-devel-linux-x86_64-fedora-clang 2.1 208.50 OK
r-devel-linux-x86_64-fedora-gcc 2.1 202.18 OK
r-devel-osx-x86_64-clang 2.1 160.04 OK
r-devel-osx-x86_64-gcc 2.1 ERROR
r-devel-windows-ix86+x86_64 2.1 12.00 122.00 134.00 OK
r-patched-linux-x86_64 2.1 5.17 90.12 95.30 OK
r-patched-solaris-sparc 2.1 1062.30 OK
r-patched-solaris-x86 2.1 248.70 OK
r-release-linux-ix86 2.1 8.00 137.00 145.00 OK
r-release-linux-x86_64 2.1 5.11 88.48 93.59 OK
r-release-osx-x86_64-mavericks 2.1 WARN
r-release-osx-x86_64-snowleopard 2.1 OK
r-release-windows-ix86+x86_64 2.1 13.00 132.00 145.00 OK
r-oldrel-windows-ix86+x86_64 2.1 13.00 121.00 134.00 OK

Check Details

Version: 2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘fields’
Flavor: r-devel-osx-x86_64-gcc

Version: 2.1
Check: examples
Result: ERROR
    Running examples in ‘IPMpack-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: makeIPMmatrix
    > ### Title: Builds IPM matrices.
    > ### Aliases: makeIPMmatrix
    >
    > ### ** Examples
    >
    > dff <- generateData()
    > Pmatrix <- makeIPMPmatrix(
    + growObj = makeGrowthObj(dff),
    + survObj = makeSurvObj(dff),
    + nBigMatrix=20,
    + minSize = min(dff$size, na.rm = TRUE),
    + maxSize=max(dff$size, na.rm=TRUE))
    > dff$fec[dff$fec==0] <- NA
    > fv1 <- makeFecObj(dff, Formula = fec~size, Transform = "log")
    > Fmatrix <- makeIPMFmatrix(
    + fecObj = fv1,
    + nBigMatrix = 20,
    + minSize = min(dff$size, na.rm = TRUE),
    + maxSize = max(dff$size, na.rm = TRUE))
    > IPMmatrix <- makeIPMmatrix(Pmatrix,Fmatrix)
    > slotNames(IPMmatrix)
    [1] ".Data" "nDiscrete" "nEnvClass" "nBigMatrix"
    [5] "meshpoints" "env.index" "names.discrete"
    >
    > require(fields)
    Loading required package: fields
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘fields’
    > par(mfrow=c(2,2))
    > image.plot(IPMmatrix@meshpoints, IPMmatrix@meshpoints, t(Pmatrix),
    + xlab = "Size(t)",
    + ylab = "Size(t+1)",
    + main = "Survival/Growth Kernel")
    Error: could not find function "image.plot"
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 2.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: Matrix
    Loading required package: MASS
    Loading required package: nlme
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'IPMpack_Vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `a4wide.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/IPMpack/vignettes/IPMpack_Vignette.tex:15: ==> Fatal error occurred, no
    output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 2.1
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    acb3d3f/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks