CRAN Package Check Results for Package JGL

Last updated on 2017-01-19 19:50:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3 0.80 20.32 21.12 NOTE
r-devel-linux-x86_64-debian-gcc 2.3 0.79 19.34 20.13 NOTE
r-devel-linux-x86_64-fedora-clang 2.3 35.42 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.3 35.07 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.3 30.02 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.3 4.00 40.00 44.00 NOTE
r-patched-linux-x86_64 2.3 0.80 16.64 17.44 NOTE
r-patched-solaris-sparc 2.3 201.80 NOTE
r-patched-solaris-x86 2.3 42.30 NOTE
r-release-linux-x86_64 2.3 0.72 16.40 17.11 NOTE
r-release-osx-x86_64-mavericks 2.3 NOTE
r-release-windows-ix86+x86_64 2.3 4.00 59.00 63.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3 4.00 38.00 42.00 NOTE

Check Details

Version: 2.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘igraph’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.jgl print.jgl
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.3
Check: R code for possible problems
Result: NOTE
    JGL: no visible global function definition for ‘cov’
    admm.iters: no visible global function definition for ‘cov’
    admm.iters.unconnected: no visible global function definition for ‘var’
    plot.jgl: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     cov plot var
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "cov", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.3
Check: Rd line widths
Result: NOTE
    Rd file 'JGL.Rd':
     \usage lines wider than 90 characters:
     JGL(Y,penalty="fused",lambda1,lambda2,rho=1,weights="equal",penalize.diagonal=FALSE,maxiter=500,tol=1e-5,warm=NULL,return.whole.theta=F ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.3
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘igraph’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.3
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.jgl print.jgl
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.3
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    JGL: no visible global function definition for ‘cov’
    admm.iters: no visible global function definition for ‘cov’
    admm.iters.unconnected: no visible global function definition for ‘var’
    plot.jgl: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     cov plot var
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "cov", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.3
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'JGL.Rd':
     \usage lines wider than 90 characters:
     JGL(Y,penalty="fused",lambda1,lambda2,rho=1,weights="equal",penalize.diagonal=FALSE,maxiter=500,tol=1e-5,warm=NULL,return.whole.theta=F ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc