CRAN Package Check Results for Package JGL

Last updated on 2015-07-05 22:47:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.3 0.69 16.97 17.66 NOTE
r-devel-linux-x86_64-debian-gcc 2.3 0.68 16.42 17.10 NOTE
r-devel-linux-x86_64-fedora-clang 2.3 32.47 NOTE
r-devel-linux-x86_64-fedora-gcc 2.3 29.74 NOTE
r-devel-osx-x86_64-clang 2.3 32.70 NOTE
r-devel-windows-ix86+x86_64 2.3 4.00 31.00 35.00 NOTE
r-patched-linux-x86_64 2.3 0.70 16.76 17.47 NOTE
r-patched-solaris-sparc 2.3 205.20 NOTE
r-patched-solaris-x86 2.3 50.90 NOTE
r-release-linux-x86_64 2.3 0.78 16.70 17.48 NOTE
r-release-osx-x86_64-mavericks 2.3 NOTE
r-release-windows-ix86+x86_64 2.3 4.00 28.00 32.00 NOTE
r-oldrel-windows-ix86+x86_64 2.3 6.00 47.00 53.00 NOTE

Check Details

Version: 2.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘igraph’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.jgl print.jgl
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.3
Check: R code for possible problems
Result: NOTE
    JGL: no visible global function definition for ‘cov’
    admm.iters: no visible global function definition for ‘cov’
    admm.iters.unconnected: no visible global function definition for ‘var’
    plot.jgl: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     cov plot var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.3
Check: Rd line widths
Result: NOTE
    Rd file 'JGL.Rd':
     \usage lines wider than 90 characters:
     JGL(Y,penalty="fused",lambda1,lambda2,rho=1,weights="equal",penalize.diagonal=FALSE,maxiter=500,tol=1e-5,warm=NULL,return.whole.theta=F ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64