CRAN Package Check Results for Package JMbayes

Last updated on 2015-07-28 17:48:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7-2 1.29 34.06 35.35 NOTE
r-devel-linux-x86_64-debian-gcc 0.7-2 1.31 33.71 35.02 NOTE
r-devel-linux-x86_64-fedora-clang 0.7-2 66.01 NOTE
r-devel-linux-x86_64-fedora-gcc 0.7-2 61.28 NOTE
r-devel-osx-x86_64-clang 0.7-2 63.79 OK
r-devel-windows-ix86+x86_64 0.7-2 5.00 51.00 56.00 NOTE
r-patched-linux-x86_64 0.7-2 1.30 34.18 35.48 OK
r-patched-solaris-sparc 0.7-2 413.10 OK
r-patched-solaris-x86 0.7-2 83.20 OK
r-release-linux-x86_64 0.7-2 1.32 34.56 35.88 OK
r-release-osx-x86_64-mavericks 0.7-2 OK
r-release-windows-ix86+x86_64 0.7-2 9.00 53.00 62.00 OK
r-oldrel-windows-ix86+x86_64 0.7-2 6.00 57.00 63.00 OK

Check Details

Version: 0.7-2
Check: R code for possible problems
Result: NOTE
    MCMCfit : log.prior.tau: no visible global function definition for
     ‘dgamma’
    MCMCfit : r.invD: no visible global function definition for ‘rWishart’
    MCMCfit : r.Bs.gammas: no visible global function definition for
     ‘rnorm’
    MCMCfit: no visible global function definition for ‘txtProgressBar’
    MCMCfit: no visible global function definition for ‘runif’
    MCMCfit: no visible global function definition for ‘rgamma’
    MCMCfit: no visible global function definition for ‘setTxtProgressBar’
    MCMCfit : <anonymous>: no visible global function definition for ‘var’
    MCMCfit : <anonymous>: no visible binding for global variable ‘sd’
    MCMCfit : <anonymous>: no visible binding for global variable
     ‘quantile’
    MCMCfit: no visible global function definition for ‘var’
    ModelMats: no visible binding for global variable ‘lag’
    ModelMats: no visible global function definition for
     ‘model.frame.default’
    ModelMats: no visible global function definition for ‘delete.response’
    ModelMats: no visible global function definition for
     ‘model.matrix.default’
    NextVisit: no visible binding for global variable ‘median’
    NextVisit: no visible global function definition for ‘reformulate’
    NextVisit: no visible global function definition for ‘delete.response’
    NextVisit : <anonymous>: no visible global function definition for
     ‘tail’
    NextVisit : <anonymous>: no visible global function definition for
     ‘model.frame.default’
    NextVisit : <anonymous>: no visible global function definition for
     ‘model.matrix.default’
    NextVisit : <anonymous>: no visible global function definition for
     ‘rnorm’
    aucJM.JMbayes: no visible global function definition for
     ‘model.response’
    aucJM.JMbayes: no visible global function definition for ‘model.frame’
    aucJM.JMbayes: no visible global function definition for ‘combn’
    aucJM.coxph: no visible global function definition for ‘model.response’
    aucJM.coxph: no visible global function definition for ‘model.frame’
    aucJM.coxph: no visible global function definition for ‘combn’
    blockUpdate: no visible global function definition for ‘runif’
    dataLM: no visible binding for global variable ‘tail’
    dataLM : <anonymous>: no visible global function definition for ‘tail’
    dgt: no visible global function definition for ‘dt’
    draw.stick : draw.ellipse : draw1ellipse: no visible global function
     definition for ‘polygon’
    draw.stick: no visible global function definition for ‘lines’
    dynCJM.JMbayes: no visible global function definition for
     ‘model.response’
    dynCJM.JMbayes: no visible global function definition for ‘model.frame’
    dynCJM.coxph: no visible global function definition for
     ‘model.response’
    dynCJM.coxph: no visible global function definition for ‘model.frame’
    dynCJM.coxph: no visible global function definition for ‘as.formula’
    dynCJM.coxph: no visible global function definition for ‘formula’
    dynInfo : <anonymous>: no visible global function definition for
     ‘rnorm’
    dynInfo: no visible global function definition for
     ‘model.frame.default’
    dynInfo: no visible global function definition for ‘reformulate’
    dynInfo: no visible global function definition for ‘delete.response’
    dynInfo: no visible global function definition for ‘model.response’
    dynInfo: no visible global function definition for
     ‘model.matrix.default’
    dynInfo: no visible binding for global variable ‘tail’
    dynInfo: no visible global function definition for ‘as.relistable’
    dynInfo: no visible global function definition for ‘optim’
    dynInfo: no visible global function definition for ‘runif’
    dynInfo: no visible global function definition for ‘tail’
    dynInfo: no visible binding for global variable ‘median’
    effectiveSize : spectrum0.ar: no visible global function definition for
     ‘lm.fit’
    effectiveSize : spectrum0.ar: no visible global function definition for
     ‘sd’
    effectiveSize : spectrum0.ar: no visible global function definition for
     ‘ar’
    effectiveSize: no visible binding for global variable ‘var’
    find_positions: no visible global function definition for ‘glob2rx’
    fitted.JMbayes: no visible global function definition for ‘reformulate’
    fitted.JMbayes: no visible global function definition for
     ‘delete.response’
    fitted.JMbayes: no visible global function definition for ‘model.frame’
    fitted.JMbayes: no visible global function definition for
     ‘model.matrix’
    hMats: no visible binding for global variable ‘lag’
    hMats: no visible global function definition for ‘model.frame.default’
    hMats: no visible global function definition for ‘delete.response’
    hMats: no visible global function definition for ‘model.matrix.default’
    hessian.JMbayes: no visible global function definition for
     ‘as.relistable’
    hessian.JMbayes : lL: no visible global function definition for
     ‘relist’
    hessian.JMbayes : lL: no visible global function definition for
     ‘logLik’
    initSurvival: no visible global function definition for ‘coef’
    initSurvival: no visible global function definition for ‘vcov’
    initSurvival: no visible global function definition for ‘optim’
    initSurvival: no visible global function definition for ‘as.relistable’
    initSurvival : fn3: no visible global function definition for ‘relist’
    initSurvival: no visible global function definition for ‘relist’
    jointModelBayes: no visible global function definition for ‘formula’
    jointModelBayes: no visible binding for global variable ‘head’
    jointModelBayes: no visible binding for global variable ‘tail’
    jointModelBayes: no visible global function definition for
     ‘model.frame’
    jointModelBayes: no visible global function definition for ‘terms’
    jointModelBayes: no visible global function definition for
     ‘model.matrix’
    jointModelBayes: no visible global function definition for
     ‘model.response’
    jointModelBayes : densLong: no visible global function definition for
     ‘dnorm’
    jointModelBayes: no visible global function definition for ‘optim’
    jointModelBayes: no visible binding for global variable ‘dnorm’
    jointModelBayes: no visible binding for global variable ‘dgamma’
    jointModelBayes: no visible binding for global variable ‘dunif’
    jointModelBayes : weightFun: no visible global function definition for
     ‘dnorm’
    jointModelBayes : weightFun: no visible global function definition for
     ‘pnorm’
    jointModelBayes: no visible global function definition for ‘quantile’
    jointModelBayes: no visible global function definition for ‘tail’
    jointModelBayes: no visible global function definition for ‘head’
    jointModelBayes: no visible global function definition for ‘vcov’
    jointModelBayes: no visible global function definition for ‘coef’
    logLik.JMbayes: no visible global function definition for ‘optim’
    logLik.JMbayes: no visible global function definition for ‘dgamma’
    marglogLik: no visible global function definition for ‘model.frame’
    marglogLik: no visible global function definition for ‘reformulate’
    marglogLik: no visible global function definition for ‘delete.response’
    marglogLik: no visible global function definition for ‘model.response’
    marglogLik: no visible global function definition for ‘model.matrix’
    marglogLik: no visible global function definition for ‘drop.terms’
    marglogLik: no visible binding for global variable ‘tail’
    marglogLik: no visible global function definition for ‘as.relistable’
    marglogLik : logPost: no visible global function definition for
     ‘relist’
    marglogLik : logPost: no visible global function definition for
     ‘dgamma’
    marglogLik: no visible global function definition for ‘optim’
    marglogLik: no visible global function definition for ‘relist’
    modes: no visible global function definition for ‘density’
    pgt: no visible global function definition for ‘pt’
    plot.JMbayes: no visible global function definition for ‘par’
    plot.JMbayes: no visible global function definition for ‘plot’
    plot.JMbayes: no visible global function definition for ‘bw.SJ’
    plot.JMbayes: no visible global function definition for ‘density’
    plot.JMbayes: no visible global function definition for ‘acf’
    plot.JMbayes: no visible global function definition for ‘matplot’
    plot.JMbayes: no visible global function definition for ‘quantile’
    plot.rocJM: no visible global function definition for ‘plot’
    plot.rocJM: no visible global function definition for ‘abline’
    plot.survfit.JMbayes: no visible global function definition for ‘par’
    plot.survfit.JMbayes: no visible global function definition for
     ‘matplot’
    plot.survfit.JMbayes: no visible global function definition for
     ‘polygon’
    plot.survfit.JMbayes: no visible global function definition for
     ‘matlines’
    plot.survfit.JMbayes: no visible global function definition for ‘plot’
    plot.survfit.JMbayes: no visible global function definition for ‘lines’
    plot.survfit.JMbayes: no visible global function definition for
     ‘abline’
    plot.survfit.JMbayes: no visible global function definition for ‘axis’
    plot.survfit.JMbayes: no visible global function definition for ‘mtext’
    prederrJM.JMbayes: no visible global function definition for
     ‘model.response’
    prederrJM.JMbayes: no visible global function definition for
     ‘model.frame’
    prederrJM.coxph: no visible global function definition for
     ‘model.response’
    prederrJM.coxph: no visible global function definition for
     ‘model.frame’
    predict.JMbayes: no visible global function definition for
     ‘delete.response’
    predict.JMbayes: no visible global function definition for
     ‘model.frame’
    predict.JMbayes: no visible global function definition for
     ‘reformulate’
    predict.JMbayes: no visible global function definition for
     ‘model.matrix’
    predict.JMbayes: no visible binding for global variable ‘sd’
    predict.JMbayes: no visible binding for global variable ‘quantile’
    predict.JMbayes: no visible global function definition for
     ‘model.response’
    predict.JMbayes: no visible binding for global variable ‘tail’
    predict.JMbayes: no visible global function definition for ‘drop.terms’
    predict.JMbayes : <anonymous>: no visible global function definition
     for ‘mad’
    predict.JMbayes: no visible binding for global variable ‘head’
    predict.JMbayes: no visible global function definition for
     ‘as.relistable’
    predict.JMbayes: no visible global function definition for ‘vcov’
    predict.JMbayes: no visible global function definition for ‘optim’
    predict.JMbayes: no visible global function definition for ‘runif’
    predict.JMbayes: no visible global function definition for ‘rnorm’
    predict.JMbayes : <anonymous>: no visible binding for global variable
     ‘sd’
    predict.JMbayes : f1: no visible binding for global variable ‘quantile’
    predict.JMbayes : f2: no visible binding for global variable ‘quantile’
    print.JMbayes: no visible global function definition for ‘cov2cor’
    print.summary.JMbayes: no visible global function definition for
     ‘cov2cor’
    qgt: no visible global function definition for ‘qt’
    residuals.JMbayes: no visible global function definition for ‘fitted’
    residuals.JMbayes: no visible global function definition for ‘ave’
    rgt: no visible global function definition for ‘rt’
    rmvnorm: no visible global function definition for ‘rnorm’
    rmvt: no visible global function definition for ‘rnorm’
    rmvt: no visible global function definition for ‘rchisq’
    rocJM.JMbayes: no visible global function definition for
     ‘model.response’
    rocJM.JMbayes: no visible global function definition for ‘model.frame’
    rowMedians: no visible binding for global variable ‘median’
    slice.shape: no visible global function definition for ‘rexp’
    slice.shape: no visible global function definition for ‘runif’
    slice.tau: no visible global function definition for ‘rexp’
    slice.tau: no visible global function definition for ‘runif’
    smilyface : getYmult: no visible global function definition for
     ‘dev.cur’
    smilyface : getYmult: no visible global function definition for ‘par’
    smilyface : draw.circle: no visible global function definition for
     ‘par’
    smilyface : draw.circle: no visible global function definition for
     ‘polygon’
    smilyface : draw.arc: no visible global function definition for ‘par’
    smilyface : draw.arc: no visible global function definition for
     ‘dev.size’
    smilyface : draw.arc : draw.arc.0: no visible global function
     definition for ‘segments’
    smilyface : draw.arc: no visible global function definition for
     ‘xy.coords’
    smilyface: no visible global function definition for ‘points’
    stdErr: no visible binding for global variable ‘var’
    survPriors: no visible global function definition for ‘vcov’
    survfitJM.JMbayes: no visible global function definition for ‘quantile’
    survfitJM.JMbayes: no visible global function definition for
     ‘model.frame.default’
    survfitJM.JMbayes: no visible global function definition for
     ‘reformulate’
    survfitJM.JMbayes: no visible global function definition for
     ‘delete.response’
    survfitJM.JMbayes: no visible global function definition for
     ‘model.response’
    survfitJM.JMbayes: no visible global function definition for
     ‘model.matrix.default’
    survfitJM.JMbayes: no visible binding for global variable ‘tail’
    survfitJM.JMbayes: no visible global function definition for
     ‘model.frame’
    survfitJM.JMbayes: no visible global function definition for
     ‘drop.terms’
    survfitJM.JMbayes: no visible binding for global variable ‘head’
    survfitJM.JMbayes: no visible global function definition for
     ‘as.relistable’
    survfitJM.JMbayes: no visible global function definition for ‘optim’
    survfitJM.JMbayes: no visible global function definition for ‘runif’
    survfitJM.JMbayes: no visible binding for global variable ‘median’
    survfitJM.JMbayes: no visible binding for global variable ‘quantile’
    survfitJM.JMbayes: no visible global function definition for
     ‘model.matrix’
    survivalFun: no visible global function definition for ‘reformulate’
    survivalFun: no visible global function definition for
     ‘delete.response’
    survivalFun: no visible global function definition for
     ‘model.frame.default’
    survivalFun: no visible global function definition for
     ‘model.matrix.default’
    survivalFun: no visible binding for global variable ‘quantile’
    trimAboveMean: no visible global function definition for ‘quantile’
    Undefined global functions or variables:
     abline acf ar as.formula as.relistable ave axis bw.SJ coef combn
     cov2cor delete.response density dev.cur dev.size dgamma dnorm
     drop.terms dt dunif fitted formula glob2rx head lag lines lm.fit
     logLik mad matlines matplot median model.frame model.frame.default
     model.matrix model.matrix.default model.response mtext optim par plot
     pnorm points polygon pt qt quantile rWishart rchisq reformulate
     relist rexp rgamma rnorm rt runif sd segments setTxtProgressBar tail
     terms txtProgressBar var vcov xy.coords
    Consider adding
     importFrom("grDevices", "dev.cur", "dev.size", "xy.coords")
     importFrom("graphics", "abline", "axis", "lines", "matlines",
     "matplot", "mtext", "par", "plot", "points", "polygon",
     "segments")
     importFrom("stats", "acf", "ar", "as.formula", "ave", "bw.SJ", "coef",
     "cov2cor", "delete.response", "density", "dgamma", "dnorm",
     "drop.terms", "dt", "dunif", "fitted", "formula", "lag",
     "lm.fit", "logLik", "mad", "median", "model.frame",
     "model.frame.default", "model.matrix",
     "model.matrix.default", "model.response", "optim", "pnorm",
     "pt", "qt", "quantile", "rWishart", "rchisq", "reformulate",
     "rexp", "rgamma", "rnorm", "rt", "runif", "sd", "terms",
     "var", "vcov")
     importFrom("utils", "as.relistable", "combn", "glob2rx", "head",
     "relist", "setTxtProgressBar", "tail", "txtProgressBar")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64