CRAN Package Check Results for Package LSD

Last updated on 2014-12-18 11:50:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.5 1.29 92.74 94.03 NOTE
r-devel-linux-x86_64-debian-gcc 2.5 1.02 90.71 91.73 NOTE
r-devel-linux-x86_64-fedora-clang 2.5 191.47 NOTE
r-devel-linux-x86_64-fedora-gcc 2.5 193.87 NOTE
r-devel-osx-x86_64-clang 2.5 140.78 NOTE
r-devel-windows-ix86+x86_64 2.5 9.00 139.00 148.00 NOTE
r-patched-linux-x86_64 2.5 1.03 89.27 90.30 NOTE
r-patched-solaris-sparc 2.5 2037.90 NOTE
r-patched-solaris-x86 2.5 217.70 NOTE
r-release-linux-ix86 2.5 1.41 147.01 148.42 NOTE
r-release-linux-x86_64 2.5 1.04 103.74 104.78 NOTE
r-release-osx-x86_64-mavericks 2.5 NOTE
r-release-osx-x86_64-snowleopard 2.5 NOTE
r-release-windows-ix86+x86_64 2.5 5.00 151.00 156.00 NOTE
r-oldrel-windows-ix86+x86_64 2.5 5.00 124.00 129.00 NOTE

Check Details

Version: 2.5
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘MASS’ ‘gtools’ ‘RColorBrewer’ ‘colorRamps’ ‘schoolmath’ ‘ellipse’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.5
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘RColorBrewer’ ‘colorRamps’ ‘ellipse’ ‘gtools’ ‘schoolmath’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.5
Check: R code for possible problems
Result: NOTE
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of ‘mean’ to ‘meanlog’
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of ‘sd’ to ‘sdlog’
    colorpalette: no visible global function definition for ‘brewer.pal’
    colorpalette: no visible global function definition for ‘blue2green’
    colorpalette: no visible global function definition for
     ‘blue2green2red’
    colorpalette: no visible global function definition for ‘blue2red’
    colorpalette: no visible global function definition for ‘blue2yellow’
    colorpalette: no visible global function definition for ‘cyan2yellow’
    colorpalette: no visible global function definition for ‘green2red’
    colorpalette: no visible global function definition for ‘magenta2green’
    colorpalette: no visible global function definition for ‘matlab.like’
    colorpalette: no visible global function definition for ‘matlab.like2’
    colorpalette: no visible global function definition for
     ‘primary.colors’
    colorpalette: no visible global function definition for ‘ygobb’
    distinctcolors: no visible global function definition for
     ‘permutations’
    ellipsescatter : add.ellipses: no visible global function definition
     for ‘ellipse’
    gridfkt: no visible global function definition for ‘brewer.pal’
    kde2d.adj: no visible global function definition for ‘bandwidth.nrd’
    windowxy: no visible global function definition for ‘is.prim’
    windowxy: no visible global function definition for ‘prime.factor’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.5
Check: Rd line widths
Result: NOTE
    Rd file 'LSDpie.Rd':
     \usage lines wider than 90 characters:
     LSDpie(props, x = 0, y = 0, radius = 1, cols = NULL, colpal = "pies", edges = 100, add = FALSE, xlim = NULL, ylim = NULL, main = "Piech ... [TRUNCATED]
    
    Rd file 'clusterplot.Rd':
     \usage lines wider than 90 characters:
     clusterplot(clusmat, label = NULL, at = NULL, main = "Clusterplot", xlim = NULL, ylim = NULL, xlab = "Columns", ylab = "Rows", xaxt = " ... [TRUNCATED]
    
    Rd file 'comparisonplot.Rd':
     \usage lines wider than 90 characters:
     comparisonplot(x, y, histbreaks = 30, adjust = 1, colpal = "heat", main = NULL, xlim = NULL, ylim = NULL, ab = FALSE, add.density = FAL ... [TRUNCATED]
     cplot(x, y, histbreaks = 30, adjust = 1, colpal = "heat", main = NULL, xlim = NULL, ylim = NULL, ab = FALSE, add.density = FALSE, col.d ... [TRUNCATED]
    
    Rd file 'densitylane.Rd':
     \usage lines wider than 90 characters:
     densitylane(x, y, pos = 1, width = 0.4, colpal = "standard", horizontal = horizontal, alpha = NULL, ncol = 75)
    
    Rd file 'ellipsescatter.Rd':
     \usage lines wider than 90 characters:
     ellipsescatter(x, y, groups, colors = NULL, bgcol = "darkgrey", scalesd = 1, level = 0.75, legend.cex = 1.5, location = "topright", ... ... [TRUNCATED]
    
    Rd file 'heatboxplot.Rd':
     \usage lines wider than 90 characters:
     heatboxplot(x, horizontal = FALSE, add = FALSE, colpal = "standard", colpals = NULL, ncol = 75, lwd = 1.75, axes = TRUE, labels = NULL, ... [TRUNCATED]
    
    Rd file 'heathist.Rd':
     \usage lines wider than 90 characters:
     heathist(x, breaks = 20, main = "Heat-histogram", colpal = "greys", nobox = FALSE, revpal = FALSE, add.density = FALSE, col.density = " ... [TRUNCATED]
    
    Rd file 'heatmapairs.Rd':
     \usage lines wider than 90 characters:
     heatmapairs(mat, main = "Heat MA pairs", xlim = NULL, ylim = NULL, labels = NULL, add.points = FALSE, group = NULL, color.group = "mage ... [TRUNCATED]
    
    Rd file 'heatmaplot.Rd':
     \usage lines wider than 90 characters:
     heatmaplot(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, xlab = "M-values", ylab = " ... [TRUNCATED]
    
    Rd file 'heatmapoints.Rd':
     \usage lines wider than 90 characters:
     heatmapoints(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, alpha = NULL, add.contour ... [TRUNCATED]
    
    Rd file 'heatpairs.Rd':
     \usage lines wider than 90 characters:
     heatpairs(mat, main = "Heatpairs", xlim = NULL, ylim = NULL, labels = NULL, add.points = FALSE, group = NULL, color.group = "magenta", ... [TRUNCATED]
    
    Rd file 'heatscatter.Rd':
     \usage lines wider than 90 characters:
     heatscatter(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, main = NULL, cor = TRUE, m ... [TRUNCATED]
    
    Rd file 'heatscatterpoints.Rd':
     \usage lines wider than 90 characters:
     heatscatterpoints(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, alpha = NULL, add.co ... [TRUNCATED]
    
    Rd file 'linesplot.Rd':
     \usage lines wider than 90 characters:
     lplot(x, labels = NULL, col = "black", cols = NULL, alpha = 25, xlim = NULL, ylim = NULL, xlab = NULL, ylab = "data values", las = 1, o ... [TRUNCATED]
     linesplot(x, labels = NULL, col = "black", cols = NULL, alpha = 25, xlim = NULL, ylim = NULL, xlab = NULL, ylab = "data values", las = ... [TRUNCATED]
    
    Rd file 'msdplot.Rd':
     \usage lines wider than 90 characters:
     msdplot(x, label = NULL, at = NULL, xlim = NULL, ylim = NULL, xlab = "timepoints", ylab = "values", main = "Msdplot", xaxt = "s", xlabe ... [TRUNCATED]
    
    Rd file 'plotit.Rd':
     \usage lines wider than 90 characters:
     plotit(filename, sw = 1, sh = 1, sres = 1, plotsfkt, ww = 7, wh = 7, pointsize = 12, dev.pointsize = 8, paper = "special", quality = 10 ... [TRUNCATED]
    
    Rd file 'plotmatrix.Rd':
     \usage lines wider than 90 characters:
     plotmatrix(mat, xlim = NULL, ylim = NULL, xlab = NULL, ylab = NULL, main = NULL, type = "l", lwd = 2, at = NULL, xlabels = NULL, ltys = ... [TRUNCATED]
    
    Rd file 'singleclusterplot.Rd':
     \usage lines wider than 90 characters:
     singleclusterplot(clusmat, at = NULL, fromto = c(0.05, 0.95), colpal = "standardheat", nrcolors = 25, outer.col = "light grey", revpal ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.5
Check: R code for possible problems
Result: NOTE
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of 'mean' to 'meanlog'
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of 'sd' to 'sdlog'
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64