CRAN Package Check Results for Package LSD

Last updated on 2014-07-30 11:49:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.5 1.03 88.59 89.62 NOTE
r-devel-linux-x86_64-debian-gcc 2.5 1.02 86.90 87.91 NOTE
r-devel-linux-x86_64-fedora-clang 2.5 207.49 NOTE
r-devel-linux-x86_64-fedora-gcc 2.5 194.89 NOTE
r-devel-osx-x86_64-clang 2.5 138.82 NOTE
r-devel-windows-ix86+x86_64 2.5 5.00 139.00 144.00 NOTE
r-patched-linux-x86_64 2.5 1.00 89.36 90.36 NOTE
r-patched-solaris-sparc 2.5 2013.50 NOTE
r-patched-solaris-x86 2.5 216.80 NOTE
r-release-linux-ix86 2.5 1.44 156.37 157.81 NOTE
r-release-linux-x86_64 2.5 1.05 89.59 90.64 NOTE
r-release-osx-x86_64-mavericks 2.5 NOTE
r-release-osx-x86_64-snowleopard 2.5 NOTE
r-release-windows-ix86+x86_64 2.5 4.00 145.00 149.00 NOTE
r-oldrel-windows-ix86+x86_64 2.5 5.00 122.00 127.00 NOTE

Check Details

Version: 2.5
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     MASS gtools RColorBrewer colorRamps schoolmath ellipse
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 2.5
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     MASS RColorBrewer colorRamps ellipse gtools schoolmath
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.5
Check: R code for possible problems
Result: NOTE
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of 'mean' to 'meanlog'
    demo.linesplot: warning in rlnorm(500, mean = log(16), sd = 0.3):
     partial argument match of 'sd' to 'sdlog'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.5
Check: Rd line widths
Result: NOTE
    Rd file 'LSDpie.Rd':
     \usage lines wider than 90 characters:
     LSDpie(props, x = 0, y = 0, radius = 1, cols = NULL, colpal = "pies", edges = 100, add = FALSE, xlim = NULL, ylim = NULL, main = "Piech ... [TRUNCATED]
    
    Rd file 'clusterplot.Rd':
     \usage lines wider than 90 characters:
     clusterplot(clusmat, label = NULL, at = NULL, main = "Clusterplot", xlim = NULL, ylim = NULL, xlab = "Columns", ylab = "Rows", xaxt = " ... [TRUNCATED]
    
    Rd file 'comparisonplot.Rd':
     \usage lines wider than 90 characters:
     comparisonplot(x, y, histbreaks = 30, adjust = 1, colpal = "heat", main = NULL, xlim = NULL, ylim = NULL, ab = FALSE, add.density = FAL ... [TRUNCATED]
     cplot(x, y, histbreaks = 30, adjust = 1, colpal = "heat", main = NULL, xlim = NULL, ylim = NULL, ab = FALSE, add.density = FALSE, col.d ... [TRUNCATED]
    
    Rd file 'densitylane.Rd':
     \usage lines wider than 90 characters:
     densitylane(x, y, pos = 1, width = 0.4, colpal = "standard", horizontal = horizontal, alpha = NULL, ncol = 75)
    
    Rd file 'ellipsescatter.Rd':
     \usage lines wider than 90 characters:
     ellipsescatter(x, y, groups, colors = NULL, bgcol = "darkgrey", scalesd = 1, level = 0.75, legend.cex = 1.5, location = "topright", ... ... [TRUNCATED]
    
    Rd file 'heatboxplot.Rd':
     \usage lines wider than 90 characters:
     heatboxplot(x, horizontal = FALSE, add = FALSE, colpal = "standard", colpals = NULL, ncol = 75, lwd = 1.75, axes = TRUE, labels = NULL, ... [TRUNCATED]
    
    Rd file 'heathist.Rd':
     \usage lines wider than 90 characters:
     heathist(x, breaks = 20, main = "Heat-histogram", colpal = "greys", nobox = FALSE, revpal = FALSE, add.density = FALSE, col.density = " ... [TRUNCATED]
    
    Rd file 'heatmapairs.Rd':
     \usage lines wider than 90 characters:
     heatmapairs(mat, main = "Heat MA pairs", xlim = NULL, ylim = NULL, labels = NULL, add.points = FALSE, group = NULL, color.group = "mage ... [TRUNCATED]
    
    Rd file 'heatmaplot.Rd':
     \usage lines wider than 90 characters:
     heatmaplot(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, xlab = "M-values", ylab = " ... [TRUNCATED]
    
    Rd file 'heatmapoints.Rd':
     \usage lines wider than 90 characters:
     heatmapoints(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, alpha = NULL, add.contour ... [TRUNCATED]
    
    Rd file 'heatpairs.Rd':
     \usage lines wider than 90 characters:
     heatpairs(mat, main = "Heatpairs", xlim = NULL, ylim = NULL, labels = NULL, add.points = FALSE, group = NULL, color.group = "magenta", ... [TRUNCATED]
    
    Rd file 'heatscatter.Rd':
     \usage lines wider than 90 characters:
     heatscatter(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, main = NULL, cor = TRUE, m ... [TRUNCATED]
    
    Rd file 'heatscatterpoints.Rd':
     \usage lines wider than 90 characters:
     heatscatterpoints(x, y, pch = 19, cexplot = 0.5, ncol = 30, grid = 100, colpal = "heat", xlim = NULL, ylim = NULL, alpha = NULL, add.co ... [TRUNCATED]
    
    Rd file 'linesplot.Rd':
     \usage lines wider than 90 characters:
     lplot(x, labels = NULL, col = "black", cols = NULL, alpha = 25, xlim = NULL, ylim = NULL, xlab = NULL, ylab = "data values", las = 1, o ... [TRUNCATED]
     linesplot(x, labels = NULL, col = "black", cols = NULL, alpha = 25, xlim = NULL, ylim = NULL, xlab = NULL, ylab = "data values", las = ... [TRUNCATED]
    
    Rd file 'msdplot.Rd':
     \usage lines wider than 90 characters:
     msdplot(x, label = NULL, at = NULL, xlim = NULL, ylim = NULL, xlab = "timepoints", ylab = "values", main = "Msdplot", xaxt = "s", xlabe ... [TRUNCATED]
    
    Rd file 'plotit.Rd':
     \usage lines wider than 90 characters:
     plotit(filename, sw = 1, sh = 1, sres = 1, plotsfkt, ww = 7, wh = 7, pointsize = 12, dev.pointsize = 8, paper = "special", quality = 10 ... [TRUNCATED]
    
    Rd file 'plotmatrix.Rd':
     \usage lines wider than 90 characters:
     plotmatrix(mat, xlim = NULL, ylim = NULL, xlab = NULL, ylab = NULL, main = NULL, type = "l", lwd = 2, at = NULL, xlabels = NULL, ltys = ... [TRUNCATED]
    
    Rd file 'singleclusterplot.Rd':
     \usage lines wider than 90 characters:
     singleclusterplot(clusmat, at = NULL, fromto = c(0.05, 0.95), colpal = "standardheat", nrcolors = 25, outer.col = "light grey", revpal ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc