CRAN Package Check Results for Package MALDIquant

Last updated on 2015-08-30 23:47:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12 2.35 32.68 35.03 NOTE
r-devel-linux-x86_64-debian-gcc 1.12 2.28 33.07 35.34 NOTE
r-devel-linux-x86_64-fedora-clang 1.12 66.75 NOTE
r-devel-linux-x86_64-fedora-gcc 1.12 65.07 NOTE
r-devel-osx-x86_64-clang 1.12 62.00 NOTE
r-devel-windows-ix86+x86_64 1.12 20.00 77.00 97.00 NOTE
r-patched-linux-x86_64 1.12 2.42 33.60 36.02 NOTE
r-patched-solaris-sparc 1.12 439.60 NOTE
r-patched-solaris-x86 1.12 93.90 NOTE
r-release-linux-x86_64 1.12 2.46 34.14 36.59 NOTE
r-release-osx-x86_64-mavericks 1.12 OK
r-release-windows-ix86+x86_64 1.12 17.00 107.00 124.00 NOTE
r-oldrel-windows-ix86+x86_64 1.12 24.00 83.00 107.00 NOTE

Check Details

Version: 1.12
Check: R code for possible problems
Result: NOTE
    plotMsiSlice,matrix: warning in .plotMsiSlice(x, colRamp = colRamp,
     interpolate = interpolate, scale = scale, legend = legend, ...):
     partial argument match of ‘colRamp’ to ‘colRampList’
    .calibrateProbabilisticQuotientNormalization : <anonymous>: no visible
     global function definition for ‘median’
    .estimateBaselineMedian: no visible global function definition for
     ‘runmed’
    .filter: no visible global function definition for ‘head’
    .filter: no visible global function definition for ‘tail’
    .irregularScore: no visible global function definition for ‘head’
    .memoryUsageStr: no visible global function definition for
     ‘object.size’
    .msiLegend: no visible global function definition for ‘colorRamp’
    .msiLegend: no visible global function definition for ‘rect’
    .msiLegend: no visible global function definition for ‘rasterImage’
    .msiLegend: no visible global function definition for ‘as.raster’
    .plotMsiSlice: no visible global function definition for ‘colorRamp’
    .plotMsiSlice: no visible global function definition for ‘strheight’
    .plotMsiSlice: no visible global function definition for ‘text’
    .rasterSlice: no visible global function definition for ‘rasterImage’
    .rasterSlice: no visible global function definition for ‘as.raster’
    .rgb: no visible global function definition for ‘rgb’
    .textLabelRects : <anonymous>: no visible global function definition
     for ‘strwidth’
    .textLabelRects : <anonymous>: no visible global function definition
     for ‘strheight’
    .warpingFunctionCubic: no visible global function definition for ‘lm’
    .warpingFunctionCubic: no visible global function definition for ‘coef’
    .warpingFunctionLinear: no visible global function definition for ‘lm’
    .warpingFunctionLinear: no visible global function definition for
     ‘coef’
    .warpingFunctionLowess: no visible global function definition for
     ‘lowess’
    .warpingFunctionQuadratic: no visible global function definition for
     ‘lm’
    .warpingFunctionQuadratic: no visible global function definition for
     ‘coef’
    determineWarpingFunctions: no visible global function definition for
     ‘modifyList’
    determineWarpingFunctions: no visible global function definition for
     ‘dev.cur’
    determineWarpingFunctions: no visible global function definition for
     ‘dev.interactive’
    determineWarpingFunctions: no visible global function definition for
     ‘pdf’
    determineWarpingFunctions: no visible global function definition for
     ‘dev.new’
    determineWarpingFunctions: no visible binding for global variable
     ‘plot.default’
    determineWarpingFunctions: no visible global function definition for
     ‘dev.off’
    labelPeaks: no visible global function definition for ‘par’
    plotImsSlice: no visible global function definition for ‘colorRamp’
    plotImsSlice: no visible global function definition for ‘rgb’
    plotImsSlice: no visible global function definition for ‘rasterImage’
    plotImsSlice: no visible global function definition for ‘as.raster’
    calibrateIntensity,MassSpectrum: no visible global function definition
     for ‘median’
    labelPeaks,MassPeaks: no visible global function definition for ‘par’
    labelPeaks,MassPeaks: no visible global function definition for
     ‘arrows’
    labelPeaks,MassPeaks: no visible global function definition for ‘rect’
    labelPeaks,MassPeaks: no visible global function definition for ‘text’
    plot,AbstractMassObject-missing: no visible global function definition
     for ‘abline’
    plotMsiSlice,array: no visible global function definition for
     ‘colorRamp’
    plotMsiSlice,array: no visible global function definition for
     ‘dev.interactive’
    plotMsiSlice,list: no visible global function definition for
     ‘colorRamp’
    plotMsiSlice,matrix: no visible global function definition for
     ‘colorRamp’
    totalIonCurrent,MassSpectrum: no visible global function definition for
     ‘head’
    totalIonCurrent,MassSpectrum: no visible global function definition for
     ‘tail’
    Undefined global functions or variables:
     abline arrows as.raster coef colorRamp dev.cur dev.interactive
     dev.new dev.off head lm lowess median modifyList object.size par pdf
     plot.default rasterImage rect rgb runmed strheight strwidth tail text
    Consider adding
     importFrom("grDevices", "as.raster", "colorRamp", "dev.cur",
     "dev.interactive", "dev.new", "dev.off", "pdf", "rgb")
     importFrom("graphics", "abline", "arrows", "par", "plot.default",
     "rasterImage", "rect", "strheight", "strwidth", "text")
     importFrom("stats", "coef", "lm", "lowess", "median", "runmed")
     importFrom("utils", "head", "modifyList", "object.size", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.12
Check: R code for possible problems
Result: NOTE
    plotMsiSlice,matrix: warning in .plotMsiSlice(x, colRamp = colRamp,
     interpolate = interpolate, scale = scale, legend = legend, ...):
     partial argument match of 'colRamp' to 'colRampList'
Flavor: r-devel-osx-x86_64-clang

Version: 1.12
Check: R code for possible problems
Result: NOTE
    plotMsiSlice,matrix : .local: warning in .plotMsiSlice(x, colRamp =
     colRamp, interpolate = interpolate, scale = scale, legend = legend,
     ...): partial argument match of ‘colRamp’ to ‘colRampList’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64