CRAN Package Check Results for Package MALDIquantForeign

Last updated on 2014-04-23 07:55:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7 1.91 30.69 32.60 OK
r-devel-linux-x86_64-debian-gcc 0.7 1.91 31.34 33.25 OK
r-devel-linux-x86_64-fedora-clang 0.7 65.58 OK
r-devel-linux-x86_64-fedora-gcc 0.7 62.73 OK
r-devel-osx-x86_64-clang 0.7 68.02 OK
r-devel-osx-x86_64-gcc 0.7 ERROR
r-devel-windows-ix86+x86_64 0.7 6.00 47.00 53.00 OK
r-patched-linux-x86_64 0.7 1.88 30.80 32.68 OK
r-patched-solaris-sparc 0.7 301.20 ERROR
r-patched-solaris-x86 0.7 72.40 ERROR
r-release-linux-ix86 0.7 6.00 57.00 63.00 OK
r-release-linux-x86_64 0.7 1.88 31.39 33.26 OK
r-release-osx-x86_64-mavericks 0.7 ERROR
r-release-osx-x86_64-snowleopard 0.7 OK
r-release-windows-ix86+x86_64 0.7 6.00 50.00 56.00 OK
r-oldrel-windows-ix86+x86_64 0.7 6.00 58.00 64.00 OK

Check Details

Version: 0.7
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘readMzXmlData’ ‘XML’
    
    Package suggested but not available for checking: ‘knitr’
    
    Files named as vignettes but with no recognized vignette engine:
     ‘inst/doc/MALDIquantForeign.Rnw’
    (Is a VignetteBuilder field missing?)
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 0.7
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘MALDIquantForeign.Rnw’
     ...
     download had nonzero exit status
    Warning in .download(path[isUrl], verbose = verbose) :
     Download of https://raw.github.com/sgibb/MALDIquantForeign/master/inst/exampledata/tiny1.mzML1.1.mzML failed!
    Document is empty
    Start tag expected, '<' not found
    
     When sourcing ‘MALDIquantForeign.R’:
    Error: 1: Document is empty
    2: Start tag expected, '<' not found
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.7
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RNetCDF’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7
Check: examples
Result: ERROR
    Running examples in ‘MALDIquantForeign-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: importCdf
    > ### Title: Import CDF files
    > ### Aliases: importCdf
    >
    > ### ** Examples
    >
    > library("MALDIquant")
    > library("MALDIquantForeign")
    >
    > ## get example directory
    > exampleDirectory <- system.file("exampledata", package="MALDIquantForeign")
    >
    > ## import
    > s <- importCdf(exampleDirectory)
    Loading required package: RNetCDF
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘RNetCDF’
    Error in FUN("/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/MALDIquantForeign.Rcheck/MALDIquantForeign/exampledata/tiny.cdf"[[1L]], :
     For netCDF support the ‘RNetCDF’ package is needed.
    Please install ‘RNetCDF’: install.packages("RNetCDF}")
    Calls: importCdf -> import -> unlist -> lapply -> FUN
    Execution halted
Flavor: r-release-osx-x86_64-mavericks