CRAN Package Check Results for Package MAR1

Last updated on 2016-07-28 13:47:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.92 26.52 27.44 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.02 26.02 27.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 37.14 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 33.91 NOTE
r-devel-osx-x86_64-clang 1.0 33.85 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 40.00 45.00 NOTE
r-patched-linux-x86_64 1.0 1.21 26.53 27.74 NOTE
r-patched-solaris-sparc 1.0 243.30 NOTE
r-patched-solaris-x86 1.0 49.10 NOTE
r-release-linux-x86_64 1.0 1.04 26.46 27.51 NOTE
r-release-osx-x86_64-mavericks 1.0 WARN
r-release-windows-ix86+x86_64 1.0 6.00 40.00 46.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 60.00 65.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘MARSS’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘tcltk’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported object imported by a ':::' call: ‘MARSS:::is.diagonal’
     See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.MAR
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    bestfit.search.exhaustive: no visible global function definition for
     ‘glm’
    bestfit.search.exhaustive: no visible global function definition for
     ‘AIC’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tktoplevel’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkwm.geometry’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkwm.title’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tklabel’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘ttkprogressbar’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkgrid’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkgrid.columnconfigure’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkconfigure’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘AIC’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘glm’
    bestfit.search.exhaustive.true: no visible global function definition
     for ‘tkdestroy’
    bestfit.search.random: no visible global function definition for
     ‘tclVar’
    bestfit.search.random: no visible global function definition for
     ‘tktoplevel’
    bestfit.search.random: no visible global function definition for
     ‘tkwm.geometry’
    bestfit.search.random: no visible global function definition for
     ‘tkwm.title’
    bestfit.search.random: no visible global function definition for
     ‘tklabel’
    bestfit.search.random: no visible global function definition for
     ‘ttkprogressbar’
    bestfit.search.random: no visible global function definition for
     ‘tkgrid’
    bestfit.search.random: no visible global function definition for
     ‘tkbutton’
    bestfit.search.random: no visible global function definition for
     ‘tkfont.create’
    bestfit.search.random : <anonymous>: no visible global function
     definition for ‘tclvalue<-’
    bestfit.search.random: no visible global function definition for
     ‘tkgrid.columnconfigure’
    bestfit.search.random: no visible global function definition for
     ‘tkconfigure’
    bestfit.search.random: no visible global function definition for
     ‘runif’
    bestfit.search.random: no visible global function definition for
     ‘tclvalue’
    bestfit.search.random: no visible global function definition for
     ‘tkdestroy’
    export.MAR: no visible global function definition for ‘write.table’
    export.MAR: no visible global function definition for ‘stack’
    export.MAR : write.results: no visible global function definition for
     ‘write.table’
    export.MAR : write.results: no visible global function definition for
     ‘stack’
    fun.restrict.BC: no visible global function definition for ‘tktoplevel’
    fun.restrict.BC: no visible global function definition for ‘tkwm.title’
    fun.restrict.BC: no visible global function definition for ‘tkframe’
    fun.restrict.BC: no visible global function definition for
     ‘tkfont.create’
    fun.restrict.BC: no visible global function definition for ‘tclVar’
    fun.restrict.BC: no visible global function definition for ‘tclvalue’
    fun.restrict.BC: no visible global function definition for ‘tkbutton’
    fun.restrict.BC: no visible global function definition for
     ‘tkconfigure’
    fun.restrict.BC : <anonymous>: no visible global function definition
     for ‘tclvalue<-’
    fun.restrict.BC: no visible global function definition for ‘tkbind’
    fun.restrict.BC: no visible global function definition for ‘tkgrid’
    fun.restrict.BC: no visible global function definition for ‘tklabel’
    fun.restrict.BC: no visible global function definition for
     ‘tkwm.geometry’
    fun.restrict.BC: no visible global function definition for
     ‘tkgrid.rowconfigure’
    fun.restrict.BC: no visible global function definition for ‘tkfocus’
    fun.restrict.BC: no visible global function definition for
     ‘tkwait.variable’
    fun.restrict.BC: no visible global function definition for ‘tkdestroy’
    fun.set.variables: no visible global function definition for
     ‘tktoplevel’
    fun.set.variables: no visible global function definition for
     ‘tkwm.geometry’
    fun.set.variables: no visible global function definition for
     ‘tkwm.title’
    fun.set.variables: no visible global function definition for ‘tkframe’
    fun.set.variables: no visible global function definition for
     ‘tkfont.create’
    fun.set.variables: no visible global function definition for ‘tkgrid’
    fun.set.variables: no visible global function definition for ‘tklabel’
    fun.set.variables: no visible global function definition for ‘tclVar’
    fun.set.variables: no visible global function definition for ‘tclvalue’
    fun.set.variables : func.1: no visible global function definition for
     ‘tclvalue<-’
    fun.set.variables: no visible global function definition for ‘tkbutton’
    fun.set.variables: no visible global function definition for
     ‘tkconfigure’
    fun.set.variables: no visible global function definition for
     ‘tkgrid.configure’
    fun.set.variables: no visible global function definition for
     ‘tkgrid.columnconfigure’
    fun.set.variables : <anonymous>: no visible global function definition
     for ‘tclvalue<-’
    fun.set.variables: no visible global function definition for ‘tkbind’
    fun.set.variables: no visible global function definition for
     ‘tkwait.variable’
    fun.set.variables: no visible global function definition for
     ‘tkdestroy’
    hist.MARtop: no visible global function definition for ‘dev.new’
    hist.MARtop: no visible global function definition for ‘hist’
    hist.MARtop: no visible global function definition for ‘points’
    plot.MAR: no visible global function definition for ‘par’
    plot.MAR: no visible global function definition for ‘layout’
    plot.MAR: no visible global function definition for ‘palette’
    plot.MAR: no visible global function definition for ‘barplot’
    plot.MAR: no visible global function definition for ‘abline’
    plot.MAR: no visible global function definition for ‘points’
    plot.MAR: no visible global function definition for ‘box’
    plot.MAR: no visible global function definition for ‘plot’
    plot.MAR: no visible global function definition for ‘text’
    plot.MAR: no visible global function definition for ‘dev.new’
    plot.MAR: no visible global function definition for ‘dev.set’
    plot.MAR: no visible global function definition for ‘dev.prev’
    plot.MARtop: no visible global function definition for ‘par’
    plot.MARtop: no visible global function definition for ‘layout’
    plot.MARtop: no visible global function definition for ‘palette’
    plot.MARtop: no visible global function definition for ‘barplot’
    plot.MARtop: no visible global function definition for ‘abline’
    plot.MARtop: no visible global function definition for ‘box’
    plot.MARtop: no visible global function definition for ‘plot’
    plot.MARtop: no visible global function definition for ‘text’
    prepare.data: no visible global function definition for ‘aggregate’
    prepare.data: no visible global function definition for ‘approx’
    prepare.data: no visible global function definition for ‘na.omit’
    prepare.data: no visible global function definition for ‘runif’
    prepare.data: no visible binding for global variable ‘sd’
    run.mar: no visible global function definition for ‘flush.console’
    ss.mar1: no visible global function definition for ‘MARSS’
    summary.MAR : make.coef.sum: no visible global function definition for
     ‘aggregate’
    Undefined global functions or variables:
     AIC MARSS abline aggregate approx barplot box dev.new dev.prev
     dev.set flush.console glm hist layout na.omit palette par plot points
     runif sd stack tclVar tclvalue tclvalue<- text tkbind tkbutton
     tkconfigure tkdestroy tkfocus tkfont.create tkframe tkgrid
     tkgrid.columnconfigure tkgrid.configure tkgrid.rowconfigure tklabel
     tktoplevel tkwait.variable tkwm.geometry tkwm.title ttkprogressbar
     write.table
    Consider adding
     importFrom("grDevices", "dev.new", "dev.prev", "dev.set", "palette")
     importFrom("graphics", "abline", "barplot", "box", "hist", "layout",
     "par", "plot", "points", "text")
     importFrom("stats", "AIC", "aggregate", "approx", "glm", "na.omit",
     "runif", "sd")
     importFrom("utils", "flush.console", "stack", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key'library' or 'require' call to ‘MARSS’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘tcltk’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported object imported by a ':::' call: ‘MARSS:::is.diagonal’
     See the note in ?`:::` about the use of this operator.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: R code for possible problems
Result: NOTE
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tktoplevel'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkwm.geometry'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkwm.title'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tklabel'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'ttkprogressbar'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkgrid'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkgrid.columnconfigure'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkconfigure'
    bestfit.search.exhaustive.true: no visible global function definition
     for 'tkdestroy'
    bestfit.search.random: no visible global function definition for
     'tclVar'
    bestfit.search.random: no visible global function definition for
     'tktoplevel'
    bestfit.search.random: no visible global function definition for
     'tkwm.geometry'
    bestfit.search.random: no visible global function definition for
     'tkwm.title'
    bestfit.search.random: no visible global function definition for
     'tklabel'
    bestfit.search.random: no visible global function definition for
     'ttkprogressbar'
    bestfit.search.random: no visible global function definition for
     'tkgrid'
    bestfit.search.random: no visible global function definition for
     'tkbutton'
    bestfit.search.random: no visible global function definition for
     'tkfont.create'
    bestfit.search.random : <anonymous>: no visible global function
     definition for 'tclvalue<-'
    bestfit.search.random: no visible global function definition for
     'tkgrid.columnconfigure'
    bestfit.search.random: no visible global function definition for
     'tkconfigure'
    bestfit.search.random: no visible global function definition for
     'tclvalue'
    bestfit.search.random: no visible global function definition for
     'tkdestroy'
    fun.restrict.BC: no visible global function definition for 'tktoplevel'
    fun.restrict.BC: no visible global function definition for 'tkwm.title'
    fun.restrict.BC: no visible global function definition for 'tkframe'
    fun.restrict.BC: no visible global function definition for
     'tkfont.create'
    fun.restrict.BC: no visible global function definition for 'tclVar'
    fun.restrict.BC: no visible global function definition for 'tclvalue'
    fun.restrict.BC: no visible global function definition for 'tkbutton'
    fun.restrict.BC: no visible global function definition for
     'tkconfigure'
    fun.restrict.BC : <anonymous>: no visible global function definition
     for 'tclvalue<-'
    fun.restrict.BC: no visible global function definition for 'tkbind'
    fun.restrict.BC: no visible global function definition for 'tkgrid'
    fun.restrict.BC: no visible global function definition for 'tklabel'
    fun.restrict.BC: no visible global function definition for
     'tkwm.geometry'
    fun.restrict.BC: no visible global function definition for
     'tkgrid.rowconfigure'
    fun.restrict.BC: no visible global function definition for 'tkfocus'
    fun.restrict.BC: no visible global function definition for
     'tkwait.variable'
    fun.restrict.BC: no visible global function definition for 'tkdestroy'
    fun.set.variables: no visible global function definition for
     'tktoplevel'
    fun.set.variables: no visible global function definition for
     'tkwm.geometry'
    fun.set.variables: no visible global function definition for
     'tkwm.title'
    fun.set.variables: no visible global function definition for 'tkframe'
    fun.set.variables: no visible global function definition for
     'tkfont.create'
    fun.set.variables: no visible global function definition for 'tkgrid'
    fun.set.variables: no visible global function definition for 'tklabel'
    fun.set.variables: no visible global function definition for 'tclVar'
    fun.set.variables: no visible global function definition for 'tclvalue'
    fun.set.variables : func.1: no visible global function definition for
     'tclvalue<-'
    fun.set.variables: no visible global function definition for 'tkbutton'
    fun.set.variables: no visible global function definition for
     'tkconfigure'
    fun.set.variables: no visible global function definition for
     'tkgrid.configure'
    fun.set.variables: no visible global function definition for
     'tkgrid.columnconfigure'
    fun.set.variables : <anonymous>: no visible global function definition
     for 'tclvalue<-'
    fun.set.variables: no visible global function definition for 'tkbind'
    fun.set.variables: no visible global function definition for
     'tkwait.variable'
    fun.set.variables: no visible global function definition for
     'tkdestroy'
    ss.mar1: no visible global function definition for 'MARSS'
Flavor: r-oldrel-windows-ix86+x86_64