CRAN Package Check Results for Package MCMCpack

Last updated on 2014-10-23 11:49:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-3 173.20 45.30 218.50 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-3 143.56 42.99 186.54 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-3 514.27 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-3 352.53 NOTE
r-devel-osx-x86_64-clang 1.3-3 293.79 NOTE
r-devel-windows-ix86+x86_64 1.3-3 362.00 121.00 483.00 NOTE
r-patched-linux-x86_64 1.3-3 140.60 44.91 185.50 NOTE
r-patched-solaris-sparc 1.3-3 2586.30 NOTE
r-patched-solaris-x86 1.3-3 496.40 NOTE
r-release-linux-ix86 1.3-3 191.76 58.62 250.37 NOTE
r-release-linux-x86_64 1.3-3 140.51 45.67 186.18 NOTE
r-release-osx-x86_64-mavericks 1.3-3 NOTE
r-release-windows-ix86+x86_64 1.3-3 347.00 121.00 468.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-3 353.00 126.00 479.00 NOTE

Check Details

Version: 1.3-3
Check: installed package size
Result: NOTE
     installed size is 33.2Mb
     sub-directories of 1Mb or more:
     libs 32.4Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-3
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘HISTORY’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-3
Check: dependencies in R code
Result: NOTE
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘MCMCresidualBreakAnalysis’
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-3
Check: R code for possible problems
Result: NOTE
    plot.qrssvs: no visible global function definition for ‘dotplot’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.abline’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.dotplot’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.3-3
Check: Rd line widths
Result: NOTE
    Rd file 'HMMpanelFE.Rd':
     \examples lines wider than 100 characters:
     y[j:(j+T-1)] <- ((1-weight)*true.mean + (1-weight)*rnorm(T, 0, true.sigma) + (1-weight)*true.alpha1[i]) +
    
    Rd file 'MCMCbinaryChange.Rd':
     \examples lines wider than 100 characters:
     model0 <- MCMCbinaryChange(y, m=0, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model1 <- MCMCbinaryChange(y, m=1, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model2 <- MCMCbinaryChange(y, m=2, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model3 <- MCMCbinaryChange(y, m=3, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model4 <- MCMCbinaryChange(y, m=4, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model5 <- MCMCbinaryChange(y, m=5, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
    
    Rd file 'MCMCintervention.Rd':
     \usage lines wider than 90 characters:
     prediction.type=c("trend","ar"), change.type=c("fixed", "random", "all"),
     \examples lines wider than 100 characters:
     plotIntervention(ar1fixed, start=1871, main="Forward Analysis", alpha= 0.5, ylab="Nile River flow", xlab="Year")
     plotIntervention(ar1fixed, forward=FALSE, start=1871, main="Backward Analysis", alpha= 0.5, ylab="Nile River flow", xlab="Year")
    
    Rd file 'MCMCirtHier1d.Rd':
     \examples lines wider than 100 characters:
     scMiss[matrix(as.logical(rbinom(nrow(SupremeCourt)*ncol(SupremeCourt), 1, .1)), dim(SupremeCourt))] <- NA
    
    Rd file 'MCMCirtKdHet.Rd':
     \examples lines wider than 100 characters:
     "deviations from the party line are attributable","to idiosyncrasy rather than moderation."),cex=0.5)
    
    Rd file 'MCMCregress.Rd':
     \examples lines wider than 100 characters:
     posterior <- MCMCregress(Y~X, b0=0, B0 = 0.1, sigma.mu = 5, sigma.var = 25, data=line, verbose=1000)
    
    Rd file 'MCMCregressChange.Rd':
     \examples lines wider than 100 characters:
     model1 <- MCMCregressChange(formula, m=1, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model2 <- MCMCregressChange(formula, m=2, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model3 <- MCMCregressChange(formula, m=3, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model4 <- MCMCregressChange(formula, m=4, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model5 <- MCMCregressChange(formula, m=5, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
    
    Rd file 'plotState.Rd':
     \usage lines wider than 90 characters:
     plotState(mcmcout, main="Posterior Regime Probability", ylab=expression(paste("Pr(", S[t], "= k |", Y[t], ")")),
    
    Rd file 'testpanelSubjectBreak.Rd':
     \examples lines wider than 100 characters:
     y[j:(j+T-1)] <- ((1-weight)*true.mean + (1-weight)*rnorm(T, 0, true.sigma) + (1-weight)*true.alpha1[i]) +
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-3
Check: compilation flags in Makevars
Result: NOTE
    Package has both ‘src/Makevars.in’ and ‘src/Makevars’.
    Installation with --no-configure' is unlikely to work. If you intended
    ‘src/Makevars’ to be used on Windows, rename it to ‘src/Makevars.win’
    otherwise remove it. If ‘configure’ created ‘src/Makevars’, you need a
    ‘cleanup’ script.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64