CRAN Package Check Results for Package MCMCpack

Last updated on 2015-09-03 03:48:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-3 185.48 41.31 226.78 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-3 144.08 39.98 184.06 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-3 551.22 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-3 366.29 NOTE
r-devel-osx-x86_64-clang 1.3-3 292.95 NOTE
r-devel-windows-ix86+x86_64 1.3-3 471.00 168.00 639.00 NOTE
r-patched-linux-x86_64 1.3-3 145.59 41.49 187.08 NOTE
r-patched-solaris-sparc 1.3-3 2007.50 NOTE
r-patched-solaris-x86 1.3-3 376.50 NOTE
r-release-linux-x86_64 1.3-3 147.39 41.40 188.78 NOTE
r-release-osx-x86_64-mavericks 1.3-3 NOTE
r-release-windows-ix86+x86_64 1.3-3 459.00 168.00 627.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-3 473.00 146.00 619.00 NOTE

Check Details

Version: 1.3-3
Check: installed package size
Result: NOTE
     installed size is 29.2Mb
     sub-directories of 1Mb or more:
     libs 28.4Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-3
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘HISTORY’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-3
Check: dependencies in R code
Result: NOTE
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘MCMCresidualBreakAnalysis’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-3
Check: R code for possible problems
Result: NOTE
    dtomogplot: no visible binding for global variable ‘heat.colors’
    dtomogplot: no visible global function definition for ‘par’
    dtomogplot: no visible global function definition for ‘layout’
    dtomogplot: no visible global function definition for ‘lcm’
    dtomogplot: no visible global function definition for ‘plot.new’
    dtomogplot: no visible global function definition for ‘plot.window’
    dtomogplot: no visible global function definition for ‘rect’
    dtomogplot: no visible global function definition for ‘axis’
    dtomogplot: no visible global function definition for ‘box’
    dtomogplot: no visible global function definition for ‘plot’
    dtomogplot: no visible global function definition for ‘abline’
    mptable: no visible global function definition for ‘is’
    plot.qrssvs: no visible global function definition for ‘dotplot’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.abline’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.dotplot’
    plotChangepoint: no visible global function definition for ‘par’
    plotChangepoint: no visible global function definition for ‘plot’
    plotChangepoint: no visible global function definition for ‘axis’
    plotChangepoint: no visible global function definition for ‘axTicks’
    plotChangepoint: no visible global function definition for ‘lines’
    plotIntervention: no visible global function definition for ‘plot’
    plotIntervention: no visible global function definition for ‘abline’
    plotIntervention: no visible global function definition for ‘lines’
    plotState: no visible global function definition for ‘plot’
    plotState: no visible global function definition for ‘axis’
    plotState: no visible global function definition for ‘axTicks’
    plotState: no visible global function definition for ‘lines’
    plotState: no visible global function definition for ‘points’
    plotState: no visible global function definition for ‘legend’
    tomogplot: no visible global function definition for ‘par’
    tomogplot: no visible global function definition for ‘plot’
    tomogplot: no visible global function definition for ‘rect’
    tomogplot: no visible global function definition for ‘abline’
    tomogplot: no visible global function definition for ‘box’
    topmodels: no visible global function definition for ‘is’
    write.Scythe: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline axTicks axis box dotplot heat.colors is layout lcm legend
     lines panel.abline panel.dotplot par plot plot.new plot.window points
     rect write.table
    Consider adding
     importFrom("grDevices", "heat.colors")
     importFrom("graphics", "abline", "axTicks", "axis", "box", "layout",
     "lcm", "legend", "lines", "par", "plot", "plot.new",
     "plot.window", "points", "rect")
     importFrom("methods", "is")
     importFrom("utils", "write.table")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.3-3
Check: Rd line widths
Result: NOTE
    Rd file 'HMMpanelFE.Rd':
     \examples lines wider than 100 characters:
     y[j:(j+T-1)] <- ((1-weight)*true.mean + (1-weight)*rnorm(T, 0, true.sigma) + (1-weight)*true.alpha1[i]) +
    
    Rd file 'MCMCbinaryChange.Rd':
     \examples lines wider than 100 characters:
     model0 <- MCMCbinaryChange(y, m=0, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model1 <- MCMCbinaryChange(y, m=1, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model2 <- MCMCbinaryChange(y, m=2, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model3 <- MCMCbinaryChange(y, m=3, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model4 <- MCMCbinaryChange(y, m=4, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
     model5 <- MCMCbinaryChange(y, m=5, c0=2, d0=2, mcmc=1000, burnin=1000, verbose=500, marginal.likelihood = "Chib95")
    
    Rd file 'MCMCintervention.Rd':
     \usage lines wider than 90 characters:
     prediction.type=c("trend","ar"), change.type=c("fixed", "random", "all"),
     \examples lines wider than 100 characters:
     plotIntervention(ar1fixed, start=1871, main="Forward Analysis", alpha= 0.5, ylab="Nile River flow", xlab="Year")
     plotIntervention(ar1fixed, forward=FALSE, start=1871, main="Backward Analysis", alpha= 0.5, ylab="Nile River flow", xlab="Year")
    
    Rd file 'MCMCirtHier1d.Rd':
     \examples lines wider than 100 characters:
     scMiss[matrix(as.logical(rbinom(nrow(SupremeCourt)*ncol(SupremeCourt), 1, .1)), dim(SupremeCourt))] <- NA
    
    Rd file 'MCMCirtKdHet.Rd':
     \examples lines wider than 100 characters:
     "deviations from the party line are attributable","to idiosyncrasy rather than moderation."),cex=0.5)
    
    Rd file 'MCMCregress.Rd':
     \examples lines wider than 100 characters:
     posterior <- MCMCregress(Y~X, b0=0, B0 = 0.1, sigma.mu = 5, sigma.var = 25, data=line, verbose=1000)
    
    Rd file 'MCMCregressChange.Rd':
     \examples lines wider than 100 characters:
     model1 <- MCMCregressChange(formula, m=1, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model2 <- MCMCregressChange(formula, m=2, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model3 <- MCMCregressChange(formula, m=3, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model4 <- MCMCregressChange(formula, m=4, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
     model5 <- MCMCregressChange(formula, m=5, b0=b0, B0=B0, sigma.mu=sigma.mu, sigma.var=sigma.var, marginal.likelihood="Chib95")
    
    Rd file 'plotState.Rd':
     \usage lines wider than 90 characters:
     plotState(mcmcout, main="Posterior Regime Probability", ylab=expression(paste("Pr(", S[t], "= k |", Y[t], ")")),
    
    Rd file 'testpanelSubjectBreak.Rd':
     \examples lines wider than 100 characters:
     y[j:(j+T-1)] <- ((1-weight)*true.mean + (1-weight)*rnorm(T, 0, true.sigma) + (1-weight)*true.alpha1[i]) +
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-3
Check: compilation flags in Makevars
Result: NOTE
    Package has both ‘src/Makevars.in’ and ‘src/Makevars’.
    Installation with --no-configure' is unlikely to work. If you intended
    ‘src/Makevars’ to be used on Windows, rename it to ‘src/Makevars.win’
    otherwise remove it. If ‘configure’ created ‘src/Makevars’, you need a
    ‘cleanup’ script.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-3
Check: R code for possible problems
Result: NOTE
    plot.qrssvs: no visible global function definition for ‘dotplot’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.abline’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.dotplot’
    Undefined global functions or variables:
     dotplot panel.abline panel.dotplot
Flavor: r-devel-osx-x86_64-clang

Version: 1.3-3
Check: R code for possible problems
Result: NOTE
    plot.qrssvs: no visible global function definition for ‘dotplot’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.abline’
    plot.qrssvs : <anonymous>: no visible global function definition for
     ‘panel.dotplot’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64