CRAN Package Check Results for Package MEET

Last updated on 2015-05-25 19:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.1.1 7.50 71.46 78.96 NOTE
r-devel-linux-x86_64-debian-gcc 5.1.1 7.94 69.56 77.50 NOTE
r-devel-linux-x86_64-fedora-clang 5.1.1 163.54 NOTE
r-devel-linux-x86_64-fedora-gcc 5.1.1 155.18 NOTE
r-devel-osx-x86_64-clang 5.1.1 137.67 NOTE
r-devel-windows-ix86+x86_64 5.1.1 36.00 150.00 186.00 NOTE
r-patched-linux-x86_64 5.1.1 6.92 70.61 77.53 NOTE
r-patched-solaris-sparc 5.1.1 983.10 NOTE
r-patched-solaris-x86 5.1.1 217.50 NOTE
r-release-linux-x86_64 5.1.1 7.14 69.90 77.04 NOTE
r-release-osx-x86_64-mavericks 5.1.1 NOTE
r-release-osx-x86_64-snowleopard 5.1.1 ERROR
r-release-windows-ix86+x86_64 5.1.1 42.00 156.00 198.00 NOTE
r-oldrel-windows-ix86+x86_64 5.1.1 47.00 221.00 268.00 NOTE

Memtest notes: valgrind

Check Details

Version: 5.1.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Hmisc’ ‘KernSmooth’ ‘Matrix’ ‘ROCR’ ‘methods’ ‘pcaMethods’ ‘seqLogo’
     ‘seqinr’
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1.1
Check: Rd line widths
Result: NOTE
    Rd file 'MEET.Rd':
     \usage lines wider than 90 characters:
     MEET(TF,nameTF, seqin, alg, method, mode, org, vector, num_motif, len_motif, direction, threshold, order, model,position, mv, gapopen, ... [TRUNCATED]
    
    Rd file 'MIread.Rd':
     \examples lines wider than 100 characters:
     test<-MIread(training.set=iicc[["a1"]]$Transcriptionfactor, val.set=iicc[["a1"]]$Transcriptionfactor[1,],iicc=model)
    
    Rd file 'align.muscle.Rd':
     \usage lines wider than 90 characters:
     align.muscle(filein , fileout = "Sq.fa", gapopen = gapopen, maxiters = maxiters, gapextend = gapextend, call)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 5.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘pcaMethods’ ‘seqLogo’
    
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard