CRAN Package Check Results for Package MEET

Last updated on 2014-08-20 12:46:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.1.1 7.74 81.83 89.57 NOTE
r-devel-linux-x86_64-debian-gcc 5.1.1 7.80 81.21 89.01 NOTE
r-devel-linux-x86_64-fedora-clang 5.1.1 214.79 NOTE
r-devel-linux-x86_64-fedora-gcc 5.1.1 201.28 NOTE
r-devel-osx-x86_64-clang 5.1.1 162.98 NOTE
r-devel-windows-ix86+x86_64 5.1.1 34.00 162.00 196.00 NOTE
r-patched-linux-x86_64 5.1.1 7.96 85.49 93.45 NOTE
r-patched-solaris-sparc 5.1.1 1172.40 NOTE
r-patched-solaris-x86 5.1.1 260.10 NOTE
r-release-linux-ix86 5.1.1 10.30 105.14 115.44 NOTE
r-release-linux-x86_64 5.1.1 7.78 86.09 93.87 NOTE
r-release-osx-x86_64-mavericks 5.1.1 NOTE
r-release-osx-x86_64-snowleopard 5.1.1 NOTE
r-release-windows-ix86+x86_64 5.1.1 36.00 167.00 203.00 NOTE
r-oldrel-windows-ix86+x86_64 5.1.1 36.00 174.00 210.00 NOTE

Check Details

Version: 5.1.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 5.1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Hmisc’ ‘KernSmooth’ ‘Matrix’ ‘ROCR’ ‘methods’ ‘pcaMethods’ ‘seqLogo’
     ‘seqinr’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1.1
Check: Rd line widths
Result: NOTE
    Rd file 'MEET.Rd':
     \usage lines wider than 90 characters:
     MEET(TF,nameTF, seqin, alg, method, mode, org, vector, num_motif, len_motif, direction, threshold, order, model,position, mv, gapopen, ... [TRUNCATED]
    
    Rd file 'MIread.Rd':
     \examples lines wider than 100 characters:
     test<-MIread(training.set=iicc[["a1"]]$Transcriptionfactor, val.set=iicc[["a1"]]$Transcriptionfactor[1,],iicc=model)
    
    Rd file 'align.muscle.Rd':
     \usage lines wider than 90 characters:
     align.muscle(filein , fileout = "Sq.fa", gapopen = gapopen, maxiters = maxiters, gapextend = gapextend, call)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc