CRAN Package Check Results for Package MEET

Last updated on 2014-04-21 01:48:06.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.1.1 8.23 89.68 97.91 NOTE
r-devel-linux-x86_64-debian-gcc 5.1.1 8.84 90.46 99.30 NOTE
r-devel-linux-x86_64-fedora-clang 5.1.1 220.14 NOTE
r-devel-linux-x86_64-fedora-gcc 5.1.1 209.76 NOTE
r-devel-macosx-x86_64-clang 5.1.1 179.11 NOTE
r-devel-macosx-x86_64-gcc 5.1.1 ERROR
r-devel-windows-ix86+x86_64 5.1.1 36.00 165.00 201.00 NOTE
r-patched-linux-x86_64 5.1.1 8.27 89.85 98.12 NOTE
r-patched-solaris-sparc 5.1.1 1154.50 NOTE
r-patched-solaris-x86 5.1.1 270.70 NOTE
r-release-linux-ix86 NOTE
r-release-linux-x86_64 5.1.1 8.35 89.32 97.67 NOTE
r-release-macosx-x86_64 5.1.1 ERROR
r-release-windows-ix86+x86_64 5.1.1 44.00 179.00 223.00 NOTE
r-oldrel-windows-ix86+x86_64 5.1.1 35.00 174.00 209.00 NOTE

Check Details

Version: 5.1.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 5.1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Hmisc’ ‘KernSmooth’ ‘Matrix’ ‘ROCR’ ‘methods’ ‘pcaMethods’ ‘seqLogo’
     ‘seqinr’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1.1
Check: Rd line widths
Result: NOTE
    Rd file 'MEET.Rd':
     \usage lines wider than 90 characters:
     MEET(TF,nameTF, seqin, alg, method, mode, org, vector, num_motif, len_motif, direction, threshold, order, model,position, mv, gapopen, ... [TRUNCATED]
    
    Rd file 'MIread.Rd':
     \examples lines wider than 100 characters:
     test<-MIread(training.set=iicc[["a1"]]$Transcriptionfactor, val.set=iicc[["a1"]]$Transcriptionfactor[1,],iicc=model)
    
    Rd file 'align.muscle.Rd':
     \usage lines wider than 90 characters:
     align.muscle(filein , fileout = "Sq.fa", gapopen = gapopen, maxiters = maxiters, gapextend = gapextend, call)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 5.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘pcaMethods’ ‘Hmisc’ ‘seqLogo’
    
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc

Version: 5.1.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘pcaMethods’ ‘seqLogo’
    
    Depends: includes the non-default packages:
     ‘seqinr’ ‘pcaMethods’ ‘Matrix’ ‘ROCR’ ‘Hmisc’ ‘KernSmooth’ ‘seqLogo’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-macosx-x86_64