CRAN Package Check Results for Package MESS

Last updated on 2015-09-03 12:49:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3-2 3.57 39.32 42.89 NOTE
r-devel-linux-x86_64-debian-gcc 0.3-2 3.64 39.21 42.86 NOTE
r-devel-linux-x86_64-fedora-clang 0.3-2 86.20 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3-2 83.53 NOTE
r-devel-osx-x86_64-clang 0.3-2 73.36 NOTE
r-devel-windows-ix86+x86_64 0.3-2 15.00 71.00 86.00 NOTE
r-patched-linux-x86_64 0.3-2 4.00 40.87 44.87 NOTE
r-patched-solaris-sparc 0.3-2 584.80 NOTE
r-patched-solaris-x86 0.3-2 131.10 NOTE
r-release-linux-x86_64 0.3-2 3.69 41.40 45.10 NOTE
r-release-osx-x86_64-mavericks 0.3-2 OK
r-release-windows-ix86+x86_64 0.3-2 12.00 71.00 83.00 OK
r-oldrel-windows-ix86+x86_64 0.3-2 19.00 90.00 109.00 OK

Check Details

Version: 0.3-2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     QIC.geeglm QIC.geekin QIC.ordgee common.shared.pedigree
     common.shared.pedigreeList desctable.character desctable.data.frame
     desctable.default desctable.factor desctable.integer
     desctable.numeric drop1.geeglm print.geekin residualplot.default
     residualplot.lm wallyplot.default wallyplot.lm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3-2
Check: R code for possible problems
Result: NOTE
    QIC.geeglm : computeqic: no visible global function definition for
     ‘family’
    QIC.geeglm : computeqic: no visible global function definition for
     ‘coef’
    QIC.ordgee : computeqic: no visible global function definition for
     ‘family’
    QIC.ordgee : computeqic: no visible global function definition for
     ‘coef’
    adaptive.weights : <anonymous>: no visible global function definition
     for ‘lm.fit’
    adaptive.weights: no visible global function definition for ‘lm.fit’
    auc: no visible global function definition for ‘approx’
    auc: no visible global function definition for ‘integrate’
    auc: no visible global function definition for ‘splinefun’
    common.shared.pedigreeList: no visible global function definition for
     ‘as’
    desctable.factor: no visible global function definition for
     ‘chisq.test’
    desctable.numeric: no visible global function definition for ‘sd’
    desctable.numeric: no visible binding for global variable ‘sd’
    desctable.numeric: no visible global function definition for
     ‘oneway.test’
    drop1.geeglm: no visible global function definition for ‘model.matrix’
    drop1.geeglm: no visible global function definition for ‘drop.scope’
    drop1.geeglm: no visible global function definition for ‘terms’
    drop1.geeglm: no visible global function definition for
     ‘update.formula’
    drop1.geeglm: no visible global function definition for ‘coef’
    drop1.geeglm: no visible global function definition for ‘pchisq’
    drop1.geeglm: no visible global function definition for ‘formula’
    drop1.geese: no visible global function definition for ‘model.matrix’
    drop1.geese: no visible global function definition for ‘formula’
    drop1.geese: no visible global function definition for ‘terms’
    drop1.geese: no visible global function definition for ‘drop.scope’
    drop1.geese: no visible global function definition for ‘update.formula’
    drop1.geese: no visible global function definition for ‘coef’
    drop1.geese: no visible global function definition for ‘pchisq’
    feature.test: no visible global function definition for ‘sd’
    feature.test: no visible global function definition for ‘coef’
    feature.test: no visible global function definition for ‘predict’
    feature.test: no visible global function definition for ‘lm’
    feature.test: no visible global function definition for ‘pf’
    feature.test : <anonymous>: no visible global function definition for
     ‘coef’
    feature.test : <anonymous>: no visible global function definition for
     ‘predict’
    feature.test : <anonymous>: no visible global function definition for
     ‘lm’
    feature.test : <anonymous>: no visible global function definition for
     ‘pf’
    fitted.geese: no visible global function definition for ‘model.matrix’
    fitted.geese: no visible global function definition for ‘formula’
    fitted.geese: no visible global function definition for ‘model.offset’
    fitted.geese: no visible global function definition for ‘family’
    geekin: no visible binding for global variable ‘gaussian’
    geekin: no visible global function definition for ‘model.frame’
    gkgamma: no visible global function definition for ‘pnorm’
    gkgamma: no visible global function definition for ‘qnorm’
    plot3x3: no visible binding for global variable ‘plot’
    plot3x3: no visible global function definition for ‘par’
    plot3x3: no visible global function definition for ‘box’
    power.binom.test : pfun: no visible global function definition for
     ‘pbinom’
    power.binom.test : pfun: no visible global function definition for
     ‘qbinom’
    power.binom.test : pfun: no visible global function definition for
     ‘dbinom’
    power.binom.test: no visible global function definition for ‘uniroot’
    power.mcnemar.test : f : <anonymous>: no visible global function
     definition for ‘pbinom’
    power.mcnemar.test: no visible global function definition for ‘uniroot’
    print.geekin: no visible global function definition for ‘naprint’
    residualplot.default: no visible global function definition for ‘plot’
    residualplot.default : <anonymous>: no visible binding for global
     variable ‘rgb’
    residualplot.default : <anonymous>: no visible global function
     definition for ‘col2rgb’
    residualplot.default: no visible global function definition for ‘lines’
    residualplot.default: no visible global function definition for
     ‘smooth.spline’
    residualplot.default: no visible global function definition for ‘sd’
    residualplot.default: no visible global function definition for
     ‘polygon’
    residualplot.lm: no visible global function definition for ‘rstudent’
    residualplot.lm: no visible global function definition for ‘predict’
    rootonorm: no visible global function definition for ‘sd’
    rootonorm: no visible global function definition for ‘hist’
    rootonorm: no visible global function definition for ‘pnorm’
    rootonorm: no visible global function definition for ‘dnorm’
    rootonorm: no visible global function definition for ‘plot’
    rootonorm: no visible global function definition for ‘rect’
    rootonorm: no visible global function definition for ‘lines’
    rootonorm: no visible global function definition for ‘abline’
    scorefct: no visible global function definition for ‘coef’
    scorefct: no visible global function definition for ‘model.matrix’
    segregate.genes : <anonymous>: no visible global function definition
     for ‘rbinom’
    wallyplot: no visible binding for global variable ‘rnorm’
    wallyplot.default: no visible binding for global variable ‘rnorm’
    wallyplot.default: no visible global function definition for
     ‘complete.cases’
    wallyplot.lm: no visible binding for global variable ‘rnorm’
    wallyplot.lm: no visible global function definition for ‘rstandard’
    wallyplot.lm: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     abline approx as box chisq.test coef col2rgb complete.cases dbinom
     dnorm drop.scope family formula gaussian hist integrate lines lm
     lm.fit model.frame model.matrix model.offset naprint oneway.test par
     pbinom pchisq pf plot pnorm polygon predict qbinom qnorm rbinom rect
     rgb rnorm rstandard rstudent sd smooth.spline splinefun terms uniroot
     update.formula
    Consider adding
     importFrom("grDevices", "col2rgb", "rgb")
     importFrom("graphics", "abline", "box", "hist", "lines", "par", "plot",
     "polygon", "rect")
     importFrom("methods", "as")
     importFrom("stats", "approx", "chisq.test", "coef", "complete.cases",
     "dbinom", "dnorm", "drop.scope", "family", "formula",
     "gaussian", "integrate", "lm", "lm.fit", "model.frame",
     "model.matrix", "model.offset", "naprint", "oneway.test",
     "pbinom", "pchisq", "pf", "pnorm", "predict", "qbinom",
     "qnorm", "rbinom", "rnorm", "rstandard", "rstudent", "sd",
     "smooth.spline", "splinefun", "terms", "uniroot",
     "update.formula")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64