CRAN Package Check Results for Package MIfuns

Last updated on 2014-07-29 11:49:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.1 3.89 46.63 50.52 NOTE
r-devel-linux-x86_64-debian-gcc 5.1 3.99 46.03 50.02 NOTE
r-devel-linux-x86_64-fedora-clang 5.1 106.80 NOTE
r-devel-linux-x86_64-fedora-gcc 5.1 99.49 NOTE
r-devel-osx-x86_64-clang 5.1 87.60 NOTE
r-devel-windows-ix86+x86_64 5.1 12.00 67.00 79.00 NOTE
r-patched-linux-x86_64 5.1 3.69 45.89 49.58 NOTE
r-patched-solaris-sparc 5.1 577.30 NOTE
r-patched-solaris-x86 5.1 125.20 NOTE
r-release-linux-ix86 5.1 4.63 57.02 61.66 NOTE
r-release-linux-x86_64 5.1 3.75 47.05 50.80 NOTE
r-release-osx-x86_64-mavericks 5.1 NOTE
r-release-osx-x86_64-snowleopard 5.1 NOTE
r-release-windows-ix86+x86_64 5.1 12.00 73.00 85.00 NOTE
r-oldrel-windows-ix86+x86_64 5.1 11.00 69.00 80.00 NOTE

Check Details

Version: 5.1
Check: installed package size
Result: NOTE
     installed size is 6.3Mb
     sub-directories of 1Mb or more:
     sample 5.3Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     MASS XML lattice methods reshape
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1
Check: R code for possible problems
Result: NOTE
    File MIfuns/R/zzz.R :
     .onLoad calls:
     cat("MIfuns", utils::packageDescription("MIfuns", fields = "Version"), "\n")
    
    Package startup functions should use packageStartupMessage to
     generate messages.
    See section Good practice in '?.onAttach'.
    
    aggregate.keyed: warning in cast(molten, formula = ... ~
     aggregate.keyed.variable, fun = FUN, ...): partial argument match of
     'fun' to 'fun.aggregate'
    read.cwres.data: warning in read.table(filename, skip = 1, h = TRUE):
     partial argument match of 'h' to 'header'
    read.cwres.data: warning in read.table(tempfile, skip = 2, h = TRUE):
     partial argument match of 'h' to 'header'
    read.cwres.data: warning in read.table(deriv.file, skip = 1, h = TRUE):
     partial argument match of 'h' to 'header'
    summary.hidden.data.frame: warning in cast(molten, fun = sum): partial
     argument match of 'fun' to 'fun.aggregate'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 5.1
Check: Rd line widths
Result: NOTE
    Rd file 'as.pxml.Rd':
     \examples lines wider than 100 characters:
     ' 0 1.70000E+00 1.02000E-01 2.90000E+01 0.00000E+00 1.17001E+00 11.570086639848398',
     ' 2 1.78158E+00 1.06239E-01 3.05314E+01 0.00000E+00 1.08862E+00 9.377909428896904',
     ' 4 1.91182E+00 1.05179E-01 3.14289E+01 0.00000E+00 8.96680E-01 8.983605357031118',
     ' 6 1.94836E+00 1.01426E-01 3.20728E+01 0.00000E+00 9.06374E-01 8.940731060922468',
     ' 8 1.93983E+00 1.01742E-01 3.20128E+01 0.00000E+00 8.99988E-01 8.940110966224346',
     ' 10 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' 11 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' -1000000000 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
    
    Rd file 'electronicAppendix.Rd':
     \usage lines wider than 90 characters:
     electronicAppendix(x, as, pattern = NULL, recursive = TRUE, ignore.case = TRUE, zip = FALSE, ...)
    
    Rd file 'extensions.Rd':
     \usage lines wider than 90 characters:
     moot(x, scope = x$EVID == 2, disregard = c('TIME', 'DATETIME', 'DATE', 'TAFD', 'TAD','HOUR'), ...)
    
    Rd file 'inner.data.frame.Rd':
     \examples lines wider than 100 characters:
     inner(x,measure.var=c('Ozone','Solar.R','Wind','Temp'),na.rm=TRUE)#like previous, but dropping Month, Day
    
    Rd file 'iterations.Rd':
     \examples lines wider than 100 characters:
     ' PARAMETER: 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01 1.0000E-01',
     ' GRADIENT: 3.9317E+00 -4.0782E+02 7.1408E+02 1.8310E+01 -1.6763E+02 6.9517E-01 -8.4428E+00 -7.5683E+01 -2.1314E+02 -6.6351E+02',
     ' PARAMETER: 6.2289E-02 1.1384E+00 -1.0060E+00 -1.1735E+00 4.2648E-01 1.2235E-01 2.7340E-01 7.1404E-01 3.0674E-01 1.3337E-01',
     ' GRADIENT: 8.6318E+00 5.1291E+01 2.9047E+01 -3.5090E+01 1.2660E+01 2.2857E+00 -2.5195E+00 1.9660E+01 -1.1005E+01 -4.1891E+00',
     ' PARAMETER: -1.2851E-01 9.9652E-01 -1.1333E+00 -1.2965E+00 1.9849E-01 1.6383E-01 1.7455E+00 5.0881E-01 3.3873E-01 1.2843E-01',
     ' GRADIENT: 1.2016E+01 3.1625E+01 -3.1473E+01 -1.5576E+01 1.9959E-01 5.3062E+00 3.2026E+00 4.0190E-01 -3.6134E+00 -3.3637E+00',
     ' PARAMETER: -9.0277E-02 9.8751E-01 -1.0251E+00 -1.0561E+00 1.8848E-01 1.0188E-01 1.3933E+00 4.9185E-01 2.8957E-01 1.8878E-01',
     ' GRADIENT: -5.0246E-01 2.2589E-01 -1.7718E+00 7.8352E-01 6.4402E-01 -1.3915E-01 -1.1238E-01 1.7533E-01 1.7068E-01 1.4890E+00',
     ' PARAMETER: -8.8682E-02 9.8198E-01 -1.0240E+00 -1.0659E+00 1.7898E-01 1.0123E-01 1.3935E+00 4.9043E-01 2.8974E-01 1.7010E-01',
     ' GRADIENT: -5.8862E-01 -1.1992E+00 -4.6879E+00 -4.7829E-01 -2.2729E-01 -1.2550E-01 -2.9251E-01 4.8799E-02 1.5060E-01 -5.1096E-01',
     ' PARAMETER: -8.8040E-02 1.0105E+00 -9.9958E-01 -1.0162E+00 1.7939E-01 9.7973E-02 1.4278E+00 4.8858E-01 2.7835E-01 1.8430E-01',
     ' GRADIENT: -9.4356E-03 8.1782E-03 4.5771E-02 -1.9044E-02 -7.8125E-04 -1.0624E-03 -7.2147E-04 3.5290E-03 -2.6681E-03 1.1598E-02',
     xyplot(value~iteration|variable,it.dat[it.dat$course=='parameter',],type='l',ylab='scaled parameter',as.table=TRUE,scales=list(y=list(r ... [TRUNCATED]
     xyplot(value~iteration|variable,it.dat[it.dat$course=='gradient',] ,type='l',ylab='gradient',as.table=TRUE,scales=list(y=list(relation= ... [TRUNCATED]
    
    Rd file 'lookup.Rd':
     \examples lines wider than 100 characters:
     '; etc <parameter name="THETA1" lattice="TH1" latex="\\Theta_1">effect of weight on clearance</parameter>',
     ';<parameter name="OMEGA1" lattice="OM1" latex="\\Omega_1">interindivdual variance on volume</parameter>',
    
    Rd file 'panel.hist.Rd':
     \usage lines wider than 90 characters:
     panel.hist(x,y,level,horizontal,col.line,fill,factor,border=col.line,col=fill,offset=-0.5,font,fontface,...)
    
    Rd file 'panel.stratify.Rd':
     \usage lines wider than 90 characters:
     fontfamily = if (is.null(groups)) plot.symbol$fontfamily else superpose.symbol$fontfamily,
     fontface = if (is.null(groups)) plot.symbol$fontface else superpose.symbol$fontface,
    
    Rd file 'qsub.Rd':
     \examples lines wider than 100 characters:
     qsub('nm.pl',`@`='options',hard='',i='stdin',soft='',hard='',N=c('Run3c','Run3e'),hold_jid=c(NA,'Run3c'))
    
    Rd file 'runCommand.Rd':
     \usage lines wider than 90 characters:
     perl = if (nix()) 'perl -S' else if (!invisible) 'cmd /K perl -S' else 'cmd /C perl -S',
     L=if(split & interface=='nm.pl')c(compileflag(compiler(config(dirname(command)))),NA)else NA,
    
    Rd file 'runlog.Rd':
     \examples lines wider than 100 characters:
     ' 0 1.70000E+00 1.02000E-01 2.90000E+01 0.00000E+00 1.17001E+00 11.570086639848398',
     ' 2 1.78158E+00 1.06239E-01 3.05314E+01 0.00000E+00 1.08862E+00 9.377909428896904',
     ' 4 1.91182E+00 1.05179E-01 3.14289E+01 0.00000E+00 8.96680E-01 8.983605357031118',
     ' 6 1.94836E+00 1.01426E-01 3.20728E+01 0.00000E+00 9.06374E-01 8.940731060922468',
     ' 8 1.93983E+00 1.01742E-01 3.20128E+01 0.00000E+00 8.99988E-01 8.940110966224346',
     ' 10 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' 11 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' -1000000000 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     '1001 2 compartment base,, 0, 1, 0.1439772E+05, 0.2813E+01, 0.4840E+01, 0.2814E+01, 0.5440E+01, 0.1284E+01, 0.0000E+0 ... [TRUNCATED]
     '1001 2 compartment base,RSE,,,,0,0,0,0,0,0,0,0,0,0, 0.0000E+00,0,0,0,0,0,0,0,0,0,0,0,0,0,0, 0.0000E+00, 0.0000E+00,0,0, ,'
    
    Rd file 'wikiparse.Rd':
     \usage lines wider than 90 characters:
     wikiparse(x, sim = "~", dot = "*", pregreek = "", sup = "^", openSup = "{", closeSup = "}", sub = "_", openSub = "{", closeSub = "}", w ... [TRUNCATED]
    
    Rd file 'xyplot.ext.Rd':
     \examples lines wider than 100 characters:
     ' 0 1.70000E+00 1.02000E-01 2.90000E+01 0.00000E+00 1.17001E+00 11.570086639848398',
     ' 2 1.78158E+00 1.06239E-01 3.05314E+01 0.00000E+00 1.08862E+00 9.377909428896904',
     ' 4 1.91182E+00 1.05179E-01 3.14289E+01 0.00000E+00 8.96680E-01 8.983605357031118',
     ' 6 1.94836E+00 1.01426E-01 3.20728E+01 0.00000E+00 9.06374E-01 8.940731060922468',
     ' 8 1.93983E+00 1.01742E-01 3.20128E+01 0.00000E+00 8.99988E-01 8.940110966224346',
     ' 10 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' 11 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
     ' -1000000000 1.94057E+00 1.01681E-01 3.20217E+01 0.00000E+00 8.99322E-01 8.940101673144566',
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 5.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'fork'
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1
Check: R code for possible problems
Result: NOTE
    File 'MIfuns/R/zzz.R':
     .onLoad calls:
     cat("MIfuns", utils::packageDescription("MIfuns", fields = "Version"), "\n")
    
    Package startup functions should use 'packageStartupMessage' to
     generate messages.
    See section 'Good practice' in '?.onAttach'.
    
    aggregate.keyed: warning in cast(molten, formula = ... ~
     aggregate.keyed.variable, fun = FUN, ...): partial argument match of
     'fun' to 'fun.aggregate'
    read.cwres.data: warning in read.table(filename, skip = 1, h = TRUE):
     partial argument match of 'h' to 'header'
    read.cwres.data: warning in read.table(tempfile, skip = 2, h = TRUE):
     partial argument match of 'h' to 'header'
    read.cwres.data: warning in read.table(deriv.file, skip = 1, h = TRUE):
     partial argument match of 'h' to 'header'
    summary.hidden.data.frame: warning in cast(molten, fun = sum): partial
     argument match of 'fun' to 'fun.aggregate'
    NONR: no visible global function definition for 'handleSIGCLD'
    NONR: no visible global function definition for 'fork'
    NONR: no visible global function definition for 'exit'
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'MASS' 'XML' 'lattice' 'methods' 'reshape'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard