CRAN Package Check Results for Package MLDS

Last updated on 2015-08-03 23:47:56.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.3 0.84 28.73 29.57 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.3 1.16 28.28 29.44 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.3 60.78 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.3 58.93 NOTE
r-devel-osx-x86_64-clang 0.4.3 49.20 NOTE
r-devel-windows-ix86+x86_64 0.4.3 4.00 52.00 56.00 NOTE
r-patched-linux-x86_64 0.4.3 0.83 29.29 30.12 NOTE
r-patched-solaris-sparc 0.4.3 346.40 NOTE
r-patched-solaris-x86 0.4.3 68.60 NOTE
r-release-linux-x86_64 0.4.3 0.84 30.42 31.26 NOTE
r-release-osx-x86_64-mavericks 0.4.3 OK
r-release-windows-ix86+x86_64 0.4.3 6.00 75.00 81.00 OK
r-oldrel-windows-ix86+x86_64 0.4.3 6.00 74.00 80.00 OK

Check Details

Version: 0.4.3
Check: R code for possible problems
Result: NOTE
    DisplayOneQuad: no visible global function definition for ‘plot’
    DisplayOneTriad: no visible global function definition for ‘plot’
    Get6pts: no visible global function definition for ‘combn’
    Get6pts: no visible global function definition for ‘complete.cases’
    SimMLDS: no visible global function definition for ‘rnorm’
    binom.diagnostics: no visible global function definition for ‘fitted’
    binom.diagnostics : <anonymous>: no visible global function definition
     for ‘rbinom’
    binom.diagnostics : <anonymous>: no visible global function definition
     for ‘fitted’
    binom.diagnostics : <anonymous>: no visible global function definition
     for ‘residuals’
    binom.diagnostics: no visible global function definition for
     ‘residuals’
    boot.mlbs: no visible global function definition for ‘fitted’
    boot.mlbs: no visible global function definition for ‘rbinom’
    boot.mlbs : <anonymous>: no visible global function definition for
     ‘glm.fit’
    boot.mlbs : <anonymous>: no visible global function definition for
     ‘binomial’
    boot.mlbs: no visible binding for global variable ‘sd’
    boot.mlds: no visible global function definition for ‘fitted’
    boot.mlds: no visible global function definition for ‘rbinom’
    boot.mlds : <anonymous>: no visible global function definition for
     ‘glm.fit’
    boot.mlds : <anonymous>: no visible global function definition for
     ‘binomial’
    boot.mlds: no visible binding for global variable ‘sd’
    fitted.mlbs: no visible global function definition for ‘fitted’
    fitted.mlds: no visible global function definition for ‘fitted’
    fitted.mlds: no visible global function definition for ‘binomial’
    lik6pt: no visible global function definition for ‘predict’
    lines.mlbs: no visible global function definition for ‘lines’
    lines.mlds: no visible global function definition for ‘lines’
    logLik.mlbs: no visible global function definition for ‘logLik’
    logLik.mlds: no visible global function definition for ‘logLik’
    mlds.formula : diff.err: no visible global function definition for
     ‘binomial’
    mlds.formula: no visible global function definition for ‘optim’
    mlds.mlbs.df: no visible global function definition for ‘glm.control’
    mlds.mlbs.df : <anonymous>: no visible global function definition for
     ‘as.formula’
    mlds.mlbs.df : <anonymous>: no visible global function definition for
     ‘model.matrix’
    mlds.mlbs.df: no visible global function definition for ‘glm’
    mlds.mlbs.df: no visible global function definition for ‘binomial’
    mlds.mlbs.df: no visible global function definition for ‘coef’
    mlds.mlds.df: no visible global function definition for ‘glm.control’
    mlds.mlds.df : <anonymous>: no visible global function definition for
     ‘as.formula’
    mlds.mlds.df : <anonymous>: no visible global function definition for
     ‘model.matrix’
    mlds.mlds.df: no visible global function definition for ‘glm’
    mlds.mlds.df: no visible global function definition for ‘binomial’
    mlds.mlds.df: no visible global function definition for ‘coef’
    mlds.mlds.df : diff.err: no visible global function definition for
     ‘plogis’
    mlds.mlds.df : diff.err: no visible global function definition for
     ‘binomial’
    mlds.mlds.df : diff.sc: no visible global function definition for
     ‘qlogis’
    mlds.mlds.df : diff.sc: no visible global function definition for
     ‘optim’
    mlds.mlds.df : diff.sc: no visible global function definition for
     ‘plogis’
    plot.mlbs: no visible global function definition for ‘par’
    plot.mlbs: no visible global function definition for ‘plot’
    plot.mlds: no visible global function definition for ‘par’
    plot.mlds: no visible global function definition for ‘plot’
    plot.mlds.diag: no visible global function definition for ‘par’
    plot.mlds.diag: no visible global function definition for ‘plot’
    plot.mlds.diag: no visible global function definition for ‘lines’
    plot.mlds.diag: no visible global function definition for ‘hist’
    plot.mlds.diag: no visible global function definition for ‘abline’
    pmc: no visible global function definition for ‘predict’
    points.mlbs: no visible global function definition for ‘points’
    points.mlds: no visible global function definition for ‘points’
    predict.mlbs: no visible global function definition for ‘predict’
    predict.mlbs : <anonymous>: no visible global function definition for
     ‘as.formula’
    predict.mlbs : <anonymous>: no visible global function definition for
     ‘model.matrix’
    predict.mlds: no visible global function definition for ‘predict’
    predict.mlds: no visible global function definition for ‘binomial’
    runQuadExperiment: no visible global function definition for ‘combn’
    runQuadExperiment: no visible global function definition for ‘rbinom’
    runQuadExperiment: no visible binding for global variable ‘dev.new’
    runQuadExperiment: no visible global function definition for ‘par’
    runQuadExperiment: no visible global function definition for
     ‘graphics.off’
    runTriadExperiment: no visible global function definition for ‘combn’
    runTriadExperiment: no visible global function definition for ‘rbinom’
    runTriadExperiment: no visible binding for global variable ‘dev.new’
    runTriadExperiment: no visible global function definition for ‘par’
    runTriadExperiment: no visible global function definition for
     ‘graphics.off’
    simu.6pt: no visible global function definition for ‘fitted’
    simu.6pt: no visible global function definition for ‘rbinom’
    simu.6pt: no visible global function definition for ‘glm.control’
    summary.mlbs: no visible global function definition for ‘logLik’
    summary.mlds: no visible global function definition for ‘logLik’
    summary.mlds.bt: no visible global function definition for ‘sd’
    vcov.mlbs: no visible global function definition for ‘vcov’
    vcov.mlds: no visible global function definition for ‘vcov’
    Undefined global functions or variables:
     abline as.formula binomial coef combn complete.cases dev.new fitted
     glm glm.control glm.fit graphics.off hist lines logLik model.matrix
     optim par plogis plot points predict qlogis rbinom residuals rnorm sd
     vcov
    Consider adding
     importFrom("grDevices", "dev.new", "graphics.off")
     importFrom("graphics", "abline", "hist", "lines", "par", "plot",
     "points")
     importFrom("stats", "as.formula", "binomial", "coef", "complete.cases",
     "fitted", "glm", "glm.control", "glm.fit", "logLik",
     "model.matrix", "optim", "plogis", "predict", "qlogis",
     "rbinom", "residuals", "rnorm", "sd", "vcov")
     importFrom("utils", "combn")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.4.3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning: glm.fit: fitted probabilities numerically 0 or 1 occurred
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘MLDS.tex’ failed.
    LaTeX errors:
    ! LaTeX Error: Unknown float option `d'.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64