CRAN Package Check Results for Package MSeasy

Last updated on 2015-07-04 23:47:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.3.3 5.88 60.87 66.75 NOTE
r-devel-linux-x86_64-debian-gcc 5.3.3 5.48 58.95 64.44 NOTE
r-devel-linux-x86_64-fedora-clang 5.3.3 135.74 NOTE
r-devel-linux-x86_64-fedora-gcc 5.3.3 125.88 NOTE
r-devel-osx-x86_64-clang 5.3.3 114.78 NOTE
r-devel-windows-ix86+x86_64 5.3.3 17.00 89.00 106.00 NOTE
r-patched-linux-x86_64 5.3.3 5.43 59.22 64.65 NOTE
r-release-linux-x86_64 5.3.3 5.55 58.43 63.98 NOTE
r-release-osx-x86_64-mavericks 5.3.3 ERROR
r-release-windows-ix86+x86_64 5.3.3 20.00 91.00 111.00 NOTE
r-oldrel-windows-ix86+x86_64 5.3.3 20.00 121.00 141.00 NOTE

Check Details

Version: 5.3.3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘xcms’
     Please remove these calls from your code.
    'library' or 'require' call to ‘tcltk’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘mzR’ ‘xcms’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.DataCreation : errorrteres: no visible global function definition
     for ‘read.table’
    MS.DataCreation: no visible global function definition for ‘read.table’
    MS.DataCreation: no visible global function definition for
     ‘write.table’
    MS.DataCreation: no visible global function definition for ‘filter’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.clust: no visible global function definition for ‘read.table’
    MS.clust: no visible global function definition for ‘cutree’
    MS.clust: no visible global function definition for ‘abline’
    MS.clust: no visible global function definition for ‘text’
    MS.clust: no visible global function definition for ‘write.table’
    MS.clust: no visible global function definition for ‘as.dist’
    MS.clust: no visible global function definition for ‘cor’
    MS.clust: no visible global function definition for ‘dist’
    MS.clust: no visible global function definition for ‘kmeans’
    MS.clust: no visible global function definition for ‘pdf’
    MS.clust: no visible global function definition for ‘hist’
    MS.clust: no visible global function definition for ‘mtext’
    MS.clust: no visible global function definition for ‘dev.off’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MS.test.clust: no visible global function definition for ‘read.table’
    MS.test.clust: no visible global function definition for ‘as.dist’
    MS.test.clust: no visible global function definition for ‘cor’
    MS.test.clust: no visible global function definition for ‘hclust’
    MS.test.clust: no visible global function definition for ‘cutree’
    MS.test.clust: no visible global function definition for ‘dist’
    MS.test.clust: no visible global function definition for ‘par’
    MS.test.clust: no visible global function definition for ‘matplot’
    MS.test.clust: no visible global function definition for ‘axis’
    MS.test.clust: no visible global function definition for ‘legend’
    MS.test.clust: no visible global function definition for ‘pdf’
    MS.test.clust: no visible global function definition for ‘dev.off’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for ‘read.table’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for ‘read.table’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    trans.ASCII: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.dist axis cor cutree dev.off dist filter hclust hist kmeans
     legend matplot mtext par pdf read.table tclvalue text tk_choose.files
     tkchooseDirectory write.table
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.DataCreation : errorrteres: no visible global function definition
     for ‘read.table’
    MS.DataCreation: no visible global function definition for ‘read.table’
    MS.DataCreation: no visible global function definition for
     ‘write.table’
    MS.DataCreation: no visible global function definition for ‘filter’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.clust: no visible global function definition for ‘read.table’
    MS.clust: no visible global function definition for ‘cutree’
    MS.clust: no visible global function definition for ‘abline’
    MS.clust: no visible global function definition for ‘text’
    MS.clust: no visible global function definition for ‘write.table’
    MS.clust: no visible global function definition for ‘as.dist’
    MS.clust: no visible global function definition for ‘cor’
    MS.clust: no visible global function definition for ‘dist’
    MS.clust: no visible global function definition for ‘kmeans’
    MS.clust: no visible global function definition for ‘pdf’
    MS.clust: no visible global function definition for ‘hist’
    MS.clust: no visible global function definition for ‘mtext’
    MS.clust: no visible global function definition for ‘dev.off’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MS.test.clust: no visible global function definition for ‘read.table’
    MS.test.clust: no visible global function definition for ‘as.dist’
    MS.test.clust: no visible global function definition for ‘cor’
    MS.test.clust: no visible global function definition for ‘hclust’
    MS.test.clust: no visible global function definition for ‘cutree’
    MS.test.clust: no visible global function definition for ‘dist’
    MS.test.clust: no visible global function definition for ‘par’
    MS.test.clust: no visible global function definition for ‘matplot’
    MS.test.clust: no visible global function definition for ‘axis’
    MS.test.clust: no visible global function definition for ‘legend’
    MS.test.clust: no visible global function definition for ‘pdf’
    MS.test.clust: no visible global function definition for ‘dev.off’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for ‘read.table’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for ‘read.table’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    trans.ASCII: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.dist axis cor cutree dev.off dist filter hclust hist kmeans
     legend matplot mtext par pdf read.table tclvalue text tk_choose.files
     tkchooseDirectory write.table
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    Undefined global functions or variables:
     tclvalue tk_choose.files tkchooseDirectory
Flavor: r-devel-osx-x86_64-clang

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 5.3.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘mzR’ ‘xcms’
    
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for 'tclvalue'
    MS.DataCreation: no visible global function definition for
     'tkchooseDirectory'
    MS.clust: no visible global function definition for 'tk_choose.files'
    MS.test.clust: no visible global function definition for
     'tk_choose.files'
    MSeasyToARISTO: no visible global function definition for
     'tk_choose.files'
    MSeasyToMSP: no visible global function definition for
     'tk_choose.files'
    SearchNIST: no visible global function definition for 'tclvalue'
    SearchNIST: no visible global function definition for
     'tkchooseDirectory'
    SearchNIST: no visible global function definition for 'tk_choose.files'
    trans.ASCII: no visible global function definition for 'tclvalue'
    trans.ASCII: no visible global function definition for
     'tkchooseDirectory'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64