CRAN Package Check Results for Package MSeasy

Last updated on 2015-07-30 21:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.3.3 5.68 60.90 66.58 NOTE
r-devel-linux-x86_64-debian-gcc 5.3.3 5.15 59.34 64.49 NOTE
r-devel-linux-x86_64-fedora-clang 5.3.3 135.90 NOTE
r-devel-linux-x86_64-fedora-gcc 5.3.3 130.63 NOTE
r-devel-osx-x86_64-clang 5.3.3 117.97 NOTE
r-devel-windows-ix86+x86_64 5.3.3 21.00 95.00 116.00 NOTE
r-patched-linux-x86_64 5.3.3 5.23 58.88 64.11 NOTE
r-release-linux-x86_64 5.3.3 5.44 59.39 64.83 NOTE
r-release-osx-x86_64-mavericks 5.3.3 ERROR
r-release-windows-ix86+x86_64 5.3.3 20.00 92.00 112.00 NOTE
r-oldrel-windows-ix86+x86_64 5.3.3 21.00 132.00 153.00 NOTE

Check Details

Version: 5.3.3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘xcms’
     Please remove these calls from your code.
    'library' or 'require' call to ‘tcltk’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘mzR’ ‘xcms’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.DataCreation : errorrteres: no visible global function definition
     for ‘read.table’
    MS.DataCreation: no visible global function definition for ‘read.table’
    MS.DataCreation: no visible global function definition for
     ‘write.table’
    MS.DataCreation: no visible global function definition for ‘filter’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.clust: no visible global function definition for ‘read.table’
    MS.clust: no visible global function definition for ‘cutree’
    MS.clust: no visible global function definition for ‘abline’
    MS.clust: no visible global function definition for ‘text’
    MS.clust: no visible global function definition for ‘write.table’
    MS.clust: no visible global function definition for ‘as.dist’
    MS.clust: no visible global function definition for ‘cor’
    MS.clust: no visible global function definition for ‘dist’
    MS.clust: no visible global function definition for ‘kmeans’
    MS.clust: no visible global function definition for ‘pdf’
    MS.clust: no visible global function definition for ‘hist’
    MS.clust: no visible global function definition for ‘mtext’
    MS.clust: no visible global function definition for ‘dev.off’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MS.test.clust: no visible global function definition for ‘read.table’
    MS.test.clust: no visible global function definition for ‘as.dist’
    MS.test.clust: no visible global function definition for ‘cor’
    MS.test.clust: no visible global function definition for ‘hclust’
    MS.test.clust: no visible global function definition for ‘cutree’
    MS.test.clust: no visible global function definition for ‘dist’
    MS.test.clust: no visible global function definition for ‘par’
    MS.test.clust: no visible global function definition for ‘matplot’
    MS.test.clust: no visible global function definition for ‘axis’
    MS.test.clust: no visible global function definition for ‘legend’
    MS.test.clust: no visible global function definition for ‘pdf’
    MS.test.clust: no visible global function definition for ‘dev.off’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for ‘read.table’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for ‘read.table’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    trans.ASCII: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.dist axis cor cutree dev.off dist filter hclust hist kmeans
     legend matplot mtext par pdf read.table tclvalue text tk_choose.files
     tkchooseDirectory write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "axis", "hist", "legend", "matplot",
     "mtext", "par", "text")
     importFrom("stats", "as.dist", "cor", "cutree", "dist", "filter",
     "hclust", "kmeans")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.DataCreation : errorrteres: no visible global function definition
     for ‘read.table’
    MS.DataCreation: no visible global function definition for ‘read.table’
    MS.DataCreation: no visible global function definition for
     ‘write.table’
    MS.DataCreation: no visible global function definition for ‘filter’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.clust: no visible global function definition for ‘read.table’
    MS.clust: no visible global function definition for ‘cutree’
    MS.clust: no visible global function definition for ‘abline’
    MS.clust: no visible global function definition for ‘text’
    MS.clust: no visible global function definition for ‘write.table’
    MS.clust: no visible global function definition for ‘as.dist’
    MS.clust: no visible global function definition for ‘cor’
    MS.clust: no visible global function definition for ‘dist’
    MS.clust: no visible global function definition for ‘kmeans’
    MS.clust: no visible global function definition for ‘pdf’
    MS.clust: no visible global function definition for ‘hist’
    MS.clust: no visible global function definition for ‘mtext’
    MS.clust: no visible global function definition for ‘dev.off’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MS.test.clust: no visible global function definition for ‘read.table’
    MS.test.clust: no visible global function definition for ‘as.dist’
    MS.test.clust: no visible global function definition for ‘cor’
    MS.test.clust: no visible global function definition for ‘hclust’
    MS.test.clust: no visible global function definition for ‘cutree’
    MS.test.clust: no visible global function definition for ‘dist’
    MS.test.clust: no visible global function definition for ‘par’
    MS.test.clust: no visible global function definition for ‘matplot’
    MS.test.clust: no visible global function definition for ‘axis’
    MS.test.clust: no visible global function definition for ‘legend’
    MS.test.clust: no visible global function definition for ‘pdf’
    MS.test.clust: no visible global function definition for ‘dev.off’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for ‘read.table’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for ‘read.table’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    trans.ASCII: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.dist axis cor cutree dev.off dist filter hclust hist kmeans
     legend matplot mtext par pdf read.table tclvalue text tk_choose.files
     tkchooseDirectory write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "axis", "hist", "legend", "matplot",
     "mtext", "par", "text")
     importFrom("stats", "as.dist", "cor", "cutree", "dist", "filter",
     "hclust", "kmeans")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    Undefined global functions or variables:
     tclvalue tk_choose.files tkchooseDirectory
Flavor: r-devel-osx-x86_64-clang

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 5.3.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘mzR’ ‘xcms’
    
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for 'tclvalue'
    MS.DataCreation: no visible global function definition for
     'tkchooseDirectory'
    MS.clust: no visible global function definition for 'tk_choose.files'
    MS.test.clust: no visible global function definition for
     'tk_choose.files'
    MSeasyToARISTO: no visible global function definition for
     'tk_choose.files'
    MSeasyToMSP: no visible global function definition for
     'tk_choose.files'
    SearchNIST: no visible global function definition for 'tclvalue'
    SearchNIST: no visible global function definition for
     'tkchooseDirectory'
    SearchNIST: no visible global function definition for 'tk_choose.files'
    trans.ASCII: no visible global function definition for 'tclvalue'
    trans.ASCII: no visible global function definition for
     'tkchooseDirectory'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64