CRAN Package Check Results for Package MSeasy

Last updated on 2015-03-01 19:48:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.3.3 5.94 59.42 65.36 NOTE
r-devel-linux-x86_64-debian-gcc 5.3.3 6.08 57.02 63.10 NOTE
r-devel-linux-x86_64-fedora-clang 5.3.3 140.52 NOTE
r-devel-linux-x86_64-fedora-gcc 5.3.3 124.72 NOTE
r-devel-osx-x86_64-clang 5.3.3 120.72 NOTE
r-devel-windows-ix86+x86_64 5.3.3 15.00 85.00 100.00 NOTE
r-patched-linux-x86_64 5.3.3 8.26 84.88 93.14 NOTE
r-release-linux-ix86 5.3.3 8.66 99.94 108.60 NOTE
r-release-linux-x86_64 5.3.3 8.18 84.36 92.53 NOTE
r-release-osx-x86_64-mavericks 5.3.3 ERROR
r-release-osx-x86_64-snowleopard 5.3.3 NOTE
r-release-windows-ix86+x86_64 5.3.3 24.00 136.00 160.00 NOTE
r-oldrel-windows-ix86+x86_64 5.3.3 21.00 119.00 140.00 NOTE

Check Details

Version: 5.3.3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 5.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘xcms’
     Please remove these calls from your code.
    'library' or 'require' call to ‘tcltk’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘mzR’ ‘xcms’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘xcms’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘mzR’ ‘xcms’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘mzR’ ‘xcms’
    
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks