CRAN Package Check Results for Package MSeasy

Last updated on 2014-12-20 21:46:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 5.3.3 7.29 79.48 86.77 NOTE
r-devel-linux-x86_64-debian-gcc 5.3.3 6.86 75.92 82.78 NOTE
r-devel-linux-x86_64-fedora-clang 5.3.3 193.90 NOTE
r-devel-linux-x86_64-fedora-gcc 5.3.3 178.82 NOTE
r-devel-osx-x86_64-clang 5.3.3 165.31 NOTE
r-devel-windows-ix86+x86_64 5.3.3 23.00 106.00 129.00 NOTE
r-patched-linux-x86_64 5.3.3 7.92 83.27 91.19 NOTE
r-release-linux-ix86 5.3.3 8.58 96.34 104.92 NOTE
r-release-linux-x86_64 5.3.3 7.31 83.47 90.78 NOTE
r-release-osx-x86_64-mavericks 5.3.3 ERROR
r-release-osx-x86_64-snowleopard 5.3.3 NOTE
r-release-windows-ix86+x86_64 5.3.3 28.00 129.00 157.00 NOTE
r-oldrel-windows-ix86+x86_64 5.3.3 24.00 122.00 146.00 NOTE

Check Details

Version: 5.3.3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘xcms’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘mzR’ ‘xcms’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
    
    Found the following calls to attach():
    File ‘MSeasy/R/MS.DataCreation.R’:
     attach(what = NULL, name = "e1")
    File ‘MSeasy/R/MS.test.clust.R’:
     attach(what = NULL, name = "e1")
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 5.3.3
Check: R code for possible problems
Result: NOTE
    MS.DataCreation: no visible global function definition for ‘tclvalue’
    MS.DataCreation: no visible global function definition for
     ‘tkchooseDirectory’
    MS.clust: no visible global function definition for ‘tk_choose.files’
    MS.test.clust: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToARISTO: no visible global function definition for
     ‘tk_choose.files’
    MSeasyToMSP: no visible global function definition for
     ‘tk_choose.files’
    SearchNIST: no visible global function definition for ‘tclvalue’
    SearchNIST: no visible global function definition for
     ‘tkchooseDirectory’
    SearchNIST: no visible global function definition for ‘tk_choose.files’
    trans.ASCII: no visible global function definition for ‘tclvalue’
    trans.ASCII: no visible global function definition for
     ‘tkchooseDirectory’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-release-linux-ix86, r-release-windows-ix86+x86_64

Version: 5.3.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘mzR’ ‘xcms’
    
    Depends: includes the non-default packages:
     ‘amap’ ‘clValid’ ‘cluster’ ‘fpc’ ‘mzR’ ‘xcms’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks