CRAN Package Check Results for Package MSwM

Last updated on 2015-07-03 23:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 1.12 33.77 34.89 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 1.18 39.93 41.11 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 83.14 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 79.58 NOTE
r-devel-osx-x86_64-clang 1.2 73.40 NOTE
r-devel-windows-ix86+x86_64 1.2 8.00 70.00 78.00 NOTE
r-patched-linux-x86_64 1.2 1.08 34.91 35.99 NOTE
r-patched-solaris-sparc 1.2 520.60 NOTE
r-patched-solaris-x86 1.2 99.70 NOTE
r-release-linux-x86_64 1.2 1.10 34.72 35.82 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 6.00 69.00 75.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 5.00 74.00 79.00 OK

Check Details

Version: 1.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     AIC.MSM.glm AIC.MSM.lm intervals.MSM.glm intervals.MSM.lm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    .MSM.em: no visible global function definition for ‘model.matrix’
    .MSM.em : paralel : <anonymous>: no visible global function definition
     for ‘runif’
    .MSM.em : paralel: no visible global function definition for ‘runif’
    .MSM.formula.msmFit: no visible global function definition for ‘lm’
    .MSM.formula.msmFit: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘coef’
    .MSM.glm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.glm.msmFit: no visible global function definition for ‘update’
    .MSM.glm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.glm.msmFit: no visible global function definition for ‘coef’
    .MSM.glm.msmFit: no visible global function definition for ‘quantile’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dpois’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dbinom’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dnorm’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dgamma’
    .MSM.glm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.glm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘ts.plot’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘sd’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqnorm’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqline’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘acf’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘pacf’
    .MSM.larg.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    .MSM.lm.hessian: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘lm’
    .MSM.lm.maximEM: no visible global function definition for ‘coef’
    .MSM.lm.maximEM: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘resid’
    .MSM.lm.maximEM: no visible global function definition for
     ‘weighted.residuals’
    .MSM.lm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.lm.msmFilter: no visible global function definition for ‘dnorm’
    .MSM.lm.msmFit: no visible global function definition for ‘update’
    .MSM.lm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.lm.msmFit: no visible global function definition for ‘coef’
    .MSM.lm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.lm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.lm.summary: no visible global function definition for ‘quantile’
    .MSM.plot: no visible global function definition for ‘ts.plot’
    .MSM.plotProb : <anonymous>: no visible global function definition for
     ‘ts’
    .MSM.sma.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    fopt.lm: no visible global function definition for ‘tail’
    intervals.MSM.glm: no visible global function definition for ‘qnorm’
    intervals.MSM.lm: no visible global function definition for ‘qnorm’
    em,MSM.linear-list: no visible global function definition for
     ‘model.matrix’
    em,MSM.linear-list : paralel : <anonymous>: no visible global function
     definition for ‘runif’
    em,MSM.linear-list : paralel: no visible global function definition for
     ‘runif’
    hessian,MSM.lm: no visible global function definition for ‘tail’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘glm’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘lm’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘tail’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘resid’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘weighted.residuals’
    msmFilter,MSM.glm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for ‘dnorm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘lm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘glm’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘update’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘as.formula’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘coef’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘quantile’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dpois’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dbinom’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dnorm’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dgamma’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘update’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘as.formula’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘coef’
    plot,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘sd’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqnorm’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqline’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘acf’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘pacf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘sd’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqnorm’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqline’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘acf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘pacf’
    plotProb,MSM.linear : <anonymous>: no visible global function
     definition for ‘ts’
    plotReg,MSM.linear-character : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    plotReg,MSM.linear-missing : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    Undefined global functions or variables:
     acf as.formula coef dbinom dgamma dnorm dpois glm lm model.matrix
     pacf pnorm printCoefmat qnorm qqline qqnorm quantile resid runif sd
     tail ts ts.plot update weighted.residuals
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.2
Check: R code for possible problems
Result: NOTE
    [,MSM.fitted-character-missing-missing: warning in switch(EXP = i,
     CondMean = return(x@CondMean), error = return(x@error), Likel =
     return(x@Likel), margLik = return(x@margLik), filtProb =
     return(x@filtProb), smoProb = return(x@smoProb), states =
     return(apply(x@smoProb, 1, which.max)), smoTransMat =
     return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
     i, "is not a MSM.fitted slot")): partial argument match of 'EXP' to
     'EXPR'
    [,MSM.glm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     transMat = return(x@transMat), iniProb = return(x@iniProb), Fit =
     return(x@Fit), states = return(x@Fit["states"]), family =
     return(x@family), stop("Error:", i, "is not a MSM slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,MSM.lm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     std = return(x@std), transMat = return(x@transMat), iniProb =
     return(x@iniProb), Fit = return(x@Fit), states =
     return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
     partial argument match of 'EXP' to 'EXPR'
    .MSM.em: no visible global function definition for ‘model.matrix’
    .MSM.em : paralel : <anonymous>: no visible global function definition
     for ‘runif’
    .MSM.em : paralel: no visible global function definition for ‘runif’
    .MSM.formula.msmFit: no visible global function definition for ‘lm’
    .MSM.formula.msmFit: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘coef’
    .MSM.glm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.glm.msmFit: no visible global function definition for ‘update’
    .MSM.glm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.glm.msmFit: no visible global function definition for ‘coef’
    .MSM.glm.msmFit: no visible global function definition for ‘quantile’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dpois’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dbinom’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dnorm’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dgamma’
    .MSM.glm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.glm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘ts.plot’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘sd’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqnorm’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqline’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘acf’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘pacf’
    .MSM.larg.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    .MSM.lm.hessian: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘lm’
    .MSM.lm.maximEM: no visible global function definition for ‘coef’
    .MSM.lm.maximEM: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘resid’
    .MSM.lm.maximEM: no visible global function definition for
     ‘weighted.residuals’
    .MSM.lm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.lm.msmFilter: no visible global function definition for ‘dnorm’
    .MSM.lm.msmFit: no visible global function definition for ‘update’
    .MSM.lm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.lm.msmFit: no visible global function definition for ‘coef’
    .MSM.lm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.lm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.lm.summary: no visible global function definition for ‘quantile’
    .MSM.plot: no visible global function definition for ‘ts.plot’
    .MSM.plotProb : <anonymous>: no visible global function definition for
     ‘ts’
    .MSM.sma.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    fopt.lm: no visible global function definition for ‘tail’
    intervals.MSM.glm: no visible global function definition for ‘qnorm’
    intervals.MSM.lm: no visible global function definition for ‘qnorm’
    em,MSM.linear-list: no visible global function definition for
     ‘model.matrix’
    em,MSM.linear-list : paralel : <anonymous>: no visible global function
     definition for ‘runif’
    em,MSM.linear-list : paralel: no visible global function definition for
     ‘runif’
    hessian,MSM.lm: no visible global function definition for ‘tail’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘glm’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘lm’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘tail’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘resid’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘weighted.residuals’
    msmFilter,MSM.glm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for ‘dnorm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘lm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘glm’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘update’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘as.formula’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘coef’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘quantile’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dpois’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dbinom’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dnorm’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dgamma’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘update’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘as.formula’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘coef’
    plot,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘sd’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqnorm’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqline’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘acf’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘pacf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘sd’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqnorm’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqline’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘acf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘pacf’
    plotProb,MSM.linear : <anonymous>: no visible global function
     definition for ‘ts’
    plotReg,MSM.linear-character : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    plotReg,MSM.linear-missing : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    summary,MSM.glm : <anonymous>: no visible global function definition
     for ‘pnorm’
    summary,MSM.glm: no visible global function definition for
     ‘printCoefmat’
    summary,MSM.lm : <anonymous>: no visible global function definition for
     ‘pnorm’
    summary,MSM.lm: no visible global function definition for
     ‘printCoefmat’
    summary,MSM.lm: no visible global function definition for ‘quantile’
    Undefined global functions or variables:
     acf as.formula coef dbinom dgamma dnorm dpois glm lm model.matrix
     pacf pnorm printCoefmat qnorm qqline qqnorm quantile resid runif sd
     tail ts ts.plot update weighted.residuals
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64