CRAN Package Check Results for Package MSwM

Last updated on 2015-08-28 03:48:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 1.16 34.81 35.97 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 1.10 34.57 35.66 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 81.91 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 78.34 NOTE
r-devel-osx-x86_64-clang 1.2 67.25 NOTE
r-devel-windows-ix86+x86_64 1.2 9.00 77.00 86.00 NOTE
r-patched-linux-x86_64 1.2 1.19 34.84 36.04 NOTE
r-patched-solaris-sparc 1.2 538.20 NOTE
r-patched-solaris-x86 1.2 102.10 NOTE
r-release-linux-x86_64 1.2 1.60 34.55 36.15 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 6.00 75.00 81.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 7.00 80.00 87.00 NOTE

Check Details

Version: 1.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     AIC.MSM.glm AIC.MSM.lm intervals.MSM.glm intervals.MSM.lm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    [,MSM.fitted-character-missing-missing: warning in switch(EXP = i,
     CondMean = return(x@CondMean), error = return(x@error), Likel =
     return(x@Likel), margLik = return(x@margLik), filtProb =
     return(x@filtProb), smoProb = return(x@smoProb), states =
     return(apply(x@smoProb, 1, which.max)), smoTransMat =
     return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
     i, "is not a MSM.fitted slot")): partial argument match of ‘EXP’ to
     ‘EXPR’
    [,MSM.glm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     transMat = return(x@transMat), iniProb = return(x@iniProb), Fit =
     return(x@Fit), states = return(x@Fit["states"]), family =
     return(x@family), stop("Error:", i, "is not a MSM slot")): partial
     argument match of ‘EXP’ to ‘EXPR’
    [,MSM.lm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     std = return(x@std), transMat = return(x@transMat), iniProb =
     return(x@iniProb), Fit = return(x@Fit), states =
     return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
     partial argument match of ‘EXP’ to ‘EXPR’
    .MSM.em: no visible global function definition for ‘model.matrix’
    .MSM.em : paralel : <anonymous>: no visible global function definition
     for ‘runif’
    .MSM.em : paralel: no visible global function definition for ‘runif’
    .MSM.formula.msmFit: no visible global function definition for ‘lm’
    .MSM.formula.msmFit: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘glm’
    .MSM.glm.maximEM: no visible global function definition for ‘coef’
    .MSM.glm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.glm.msmFit: no visible global function definition for ‘update’
    .MSM.glm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.glm.msmFit: no visible global function definition for ‘coef’
    .MSM.glm.msmFit: no visible global function definition for ‘quantile’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dpois’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dbinom’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dnorm’
    .MSM.glm.msmFit : <anonymous>: no visible global function definition
     for ‘dgamma’
    .MSM.glm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.glm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘ts.plot’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘sd’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqnorm’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘qqline’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘acf’
    .MSM.larg.plotDiag : <anonymous>: no visible global function definition
     for ‘pacf’
    .MSM.larg.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    .MSM.lm.hessian: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘lm’
    .MSM.lm.maximEM: no visible global function definition for ‘coef’
    .MSM.lm.maximEM: no visible global function definition for ‘tail’
    .MSM.lm.maximEM: no visible global function definition for ‘resid’
    .MSM.lm.maximEM: no visible global function definition for
     ‘weighted.residuals’
    .MSM.lm.msmFilter: no visible global function definition for
     ‘model.matrix’
    .MSM.lm.msmFilter: no visible global function definition for ‘dnorm’
    .MSM.lm.msmFit: no visible global function definition for ‘update’
    .MSM.lm.msmFit: no visible global function definition for ‘as.formula’
    .MSM.lm.msmFit: no visible global function definition for ‘coef’
    .MSM.lm.summary : <anonymous>: no visible global function definition
     for ‘pnorm’
    .MSM.lm.summary: no visible global function definition for
     ‘printCoefmat’
    .MSM.lm.summary: no visible global function definition for ‘quantile’
    .MSM.plot: no visible global function definition for ‘ts.plot’
    .MSM.plotProb : <anonymous>: no visible global function definition for
     ‘ts’
    .MSM.sma.plotReg : <anonymous> : <anonymous>: no visible global
     function definition for ‘ts’
    fopt.lm: no visible global function definition for ‘tail’
    intervals.MSM.glm: no visible global function definition for ‘qnorm’
    intervals.MSM.lm: no visible global function definition for ‘qnorm’
    em,MSM.linear-list: no visible global function definition for
     ‘model.matrix’
    em,MSM.linear-list : paralel : <anonymous>: no visible global function
     definition for ‘runif’
    em,MSM.linear-list : paralel: no visible global function definition for
     ‘runif’
    hessian,MSM.lm: no visible global function definition for ‘tail’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘glm’
    maximEM,MSM.glm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘lm’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘coef’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘tail’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘resid’
    maximEM,MSM.lm-data.frame: no visible global function definition for
     ‘weighted.residuals’
    msmFilter,MSM.glm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for
     ‘model.matrix’
    msmFilter,MSM.lm: no visible global function definition for ‘dnorm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘lm’
    msmFit,formula-numeric-logical-ANY-data.frame-ANY: no visible global
     function definition for ‘glm’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘update’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘as.formula’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘coef’
    msmFit,glm-numeric-logical-ANY-missing-ANY: no visible global function
     definition for ‘quantile’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dpois’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dbinom’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dnorm’
    msmFit,glm-numeric-logical-ANY-missing-ANY : <anonymous>: no visible
     global function definition for ‘dgamma’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘update’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘as.formula’
    msmFit,lm-numeric-logical-ANY-missing-missing: no visible global
     function definition for ‘coef’
    plot,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘ts.plot’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘sd’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqnorm’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘qqline’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘acf’
    plotDiag,MSM.linear-ANY : <anonymous>: no visible global function
     definition for ‘pacf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘ts.plot’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘sd’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqnorm’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘qqline’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘acf’
    plotDiag,MSM.linear-missing: no visible global function definition for
     ‘pacf’
    plotProb,MSM.linear : <anonymous>: no visible global function
     definition for ‘ts’
    plotReg,MSM.linear-character : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    plotReg,MSM.linear-missing : <anonymous> : <anonymous>: no visible
     global function definition for ‘ts’
    summary,MSM.glm : <anonymous>: no visible global function definition
     for ‘pnorm’
    summary,MSM.glm: no visible global function definition for
     ‘printCoefmat’
    summary,MSM.lm : <anonymous>: no visible global function definition for
     ‘pnorm’
    summary,MSM.lm: no visible global function definition for
     ‘printCoefmat’
    summary,MSM.lm: no visible global function definition for ‘quantile’
    Undefined global functions or variables:
     acf as.formula coef dbinom dgamma dnorm dpois glm lm model.matrix
     pacf pnorm printCoefmat qnorm qqline qqnorm quantile resid runif sd
     tail ts ts.plot update weighted.residuals
    Consider adding
     importFrom("stats", "acf", "as.formula", "coef", "dbinom", "dgamma",
     "dnorm", "dpois", "glm", "lm", "model.matrix", "pacf",
     "pnorm", "printCoefmat", "qnorm", "qqline", "qqnorm",
     "quantile", "resid", "runif", "sd", "ts", "ts.plot",
     "update", "weighted.residuals")
     importFrom("utils", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    [,MSM.fitted-character-missing-missing: warning in switch(EXP = i,
     CondMean = return(x@CondMean), error = return(x@error), Likel =
     return(x@Likel), margLik = return(x@margLik), filtProb =
     return(x@filtProb), smoProb = return(x@smoProb), states =
     return(apply(x@smoProb, 1, which.max)), smoTransMat =
     return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
     i, "is not a MSM.fitted slot")): partial argument match of 'EXP' to
     'EXPR'
    [,MSM.glm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     transMat = return(x@transMat), iniProb = return(x@iniProb), Fit =
     return(x@Fit), states = return(x@Fit["states"]), family =
     return(x@family), stop("Error:", i, "is not a MSM slot")): partial
     argument match of 'EXP' to 'EXPR'
    [,MSM.lm-character-missing-missing: warning in switch(EXP = i, call =
     return(x@call), model = return(x@model), k = return(x@k), switch =
     return(x@switch), Coef = return(x@Coef), seCoef = return(x@seCoef),
     std = return(x@std), transMat = return(x@transMat), iniProb =
     return(x@iniProb), Fit = return(x@Fit), states =
     return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
     partial argument match of 'EXP' to 'EXPR'
Flavor: r-devel-osx-x86_64-clang

Version: 1.2
Check: R code for possible problems
Result: NOTE
    [,MSM.fitted-character-missing-missing : .local: warning in switch(EXP
     = i, CondMean = return(x@CondMean), error = return(x@error), Likel =
     return(x@Likel), margLik = return(x@margLik), filtProb =
     return(x@filtProb), smoProb = return(x@smoProb), states =
     return(apply(x@smoProb, 1, which.max)), smoTransMat =
     return(x@smoTransMat), logLikel = return(x@logLikel), stop("Error:",
     i, "is not a MSM.fitted slot")): partial argument match of ‘EXP’ to
     ‘EXPR’
    [,MSM.glm-character-missing-missing : .local: warning in switch(EXP =
     i, call = return(x@call), model = return(x@model), k = return(x@k),
     switch = return(x@switch), Coef = return(x@Coef), seCoef =
     return(x@seCoef), transMat = return(x@transMat), iniProb =
     return(x@iniProb), Fit = return(x@Fit), states =
     return(x@Fit["states"]), family = return(x@family), stop("Error:", i,
     "is not a MSM slot")): partial argument match of ‘EXP’ to ‘EXPR’
    [,MSM.lm-character-missing-missing : .local: warning in switch(EXP = i,
     call = return(x@call), model = return(x@model), k = return(x@k),
     switch = return(x@switch), Coef = return(x@Coef), seCoef =
     return(x@seCoef), std = return(x@std), transMat = return(x@transMat),
     iniProb = return(x@iniProb), Fit = return(x@Fit), states =
     return(x@Fit["states"]), stop("Error:", i, "is not a MSM slot")):
     partial argument match of ‘EXP’ to ‘EXPR’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64