CRAN Package Check Results for Package MetaDE

Last updated on 2014-07-30 03:48:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.5 1.92 48.72 50.64 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.5 1.81 49.22 51.03 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.5 113.69 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.5 111.16 NOTE
r-devel-osx-x86_64-clang 1.0.5 88.18 NOTE
r-devel-windows-ix86+x86_64 1.0.5 6.00 71.00 77.00 NOTE
r-patched-linux-x86_64 1.0.5 1.79 48.62 50.40 NOTE
r-patched-solaris-sparc 1.0.5 576.10 NOTE
r-patched-solaris-x86 1.0.5 122.20 NOTE
r-release-linux-ix86 1.0.5 2.33 59.19 61.52 NOTE
r-release-linux-x86_64 1.0.5 1.90 49.79 51.69 NOTE
r-release-osx-x86_64-mavericks 1.0.5 NOTE
r-release-osx-x86_64-snowleopard 1.0.5 NOTE
r-release-windows-ix86+x86_64 1.0.5 9.00 71.00 80.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.5 7.00 78.00 85.00 NOTE

Check Details

Version: 1.0.5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     Biobase combinat impute tools
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     Biobase combinat impute survival
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.5
Check: R code for possible problems
Result: NOTE
    get.RP: no visible binding for global variable na.rm
    get.RP: no visible global function definition for NaReplace2
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.5
Check: Rd line widths
Result: NOTE
    Rd file 'MetaDE.filter.Rd':
     \examples lines wider than 100 characters:
     meta.res<-MetaDE.rawdata(mydata.filtered,ind.method=c("regt","regt"),meta.method="Fisher",ind.tail="abs",nperm=10,paired=rep(FALSE,2))
    
    Rd file 'MetaDE.pvalue.Rd':
     \examples lines wider than 100 characters:
     #--then you can use meta analysis method to combine the above p-values:here I used the Fisher's method
    
    Rd file 'MetaDE.rawdata.Rd':
     \examples lines wider than 100 characters:
     test2 <-list(list(x=exp1,y=time1,censoring.status=event1),list(x=exp2,y=time2,censoring.status=event2))
    
    Rd file 'ind.analysis.Rd':
     \examples lines wider than 100 characters:
     test3<-list(list(x=exp1,y=time1,censoring.status=event1),list(x=exp2,y=time2,censoring.status=event2),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc