CRAN Package Check Results for Package MetaDE

Last updated on 2014-11-23 12:46:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.5 1.73 48.29 50.02 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.5 1.72 45.02 46.75 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.5 107.25 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.5 97.84 NOTE
r-devel-osx-x86_64-clang 1.0.5 89.08 NOTE
r-devel-windows-ix86+x86_64 1.0.5 7.00 69.00 76.00 NOTE
r-patched-linux-x86_64 1.0.5 2.05 48.20 50.25 NOTE
r-patched-solaris-sparc 1.0.5 563.30 NOTE
r-patched-solaris-x86 1.0.5 123.90 NOTE
r-release-linux-ix86 1.0.5 2.34 56.84 59.17 NOTE
r-release-linux-x86_64 1.0.5 1.77 48.28 50.05 NOTE
r-release-osx-x86_64-mavericks 1.0.5 NOTE
r-release-osx-x86_64-snowleopard 1.0.5 NOTE
r-release-windows-ix86+x86_64 1.0.5 7.00 66.00 73.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.5 7.00 78.00 85.00 NOTE

Check Details

Version: 1.0.5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Biobase’ ‘combinat’ ‘impute’ ‘tools’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Biobase’ ‘combinat’ ‘impute’ ‘survival’ ‘tools’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.5
Check: R code for possible problems
Result: NOTE
    CDF.rop : <anonymous> : <anonymous>: no visible global function
     definition for ‘dmnom’
    MetaDE.impute: no visible global function definition for ‘impute.knn’
    cal.logrank : get.stat: no visible global function definition for
     ‘coxph’
    cal.p.logrank : get.p: no visible global function definition for
     ‘coxph’
    get.RP: no visible binding for global variable ‘na.rm’
    get.RP: no visible global function definition for ‘NaReplace2’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.5
Check: Rd line widths
Result: NOTE
    Rd file 'MetaDE.filter.Rd':
     \examples lines wider than 100 characters:
     meta.res<-MetaDE.rawdata(mydata.filtered,ind.method=c("regt","regt"),meta.method="Fisher",ind.tail="abs",nperm=10,paired=rep(FALSE,2))
    
    Rd file 'MetaDE.pvalue.Rd':
     \examples lines wider than 100 characters:
     #--then you can use meta analysis method to combine the above p-values:here I used the Fisher's method
    
    Rd file 'MetaDE.rawdata.Rd':
     \examples lines wider than 100 characters:
     test2 <-list(list(x=exp1,y=time1,censoring.status=event1),list(x=exp2,y=time2,censoring.status=event2))
    
    Rd file 'ind.analysis.Rd':
     \examples lines wider than 100 characters:
     test3<-list(list(x=exp1,y=time1,censoring.status=event1),list(x=exp2,y=time2,censoring.status=event2),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘Biobase’ ‘combinat’ ‘impute’ ‘tools’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Biobase’ ‘combinat’ ‘impute’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 1.0.5
Check: R code for possible problems
Result: NOTE
    get.RP: no visible binding for global variable ‘na.rm’
    get.RP: no visible global function definition for ‘NaReplace2’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64