CRAN Package Check Results for Package MetaQC

Last updated on 2015-04-27 06:46:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.13 0.75 12.26 13.01 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.13 0.74 11.96 12.70 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.13 24.43 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.13 22.66 NOTE
r-devel-osx-x86_64-clang 0.1.13 29.03 NOTE
r-devel-windows-ix86+x86_64 0.1.13 4.00 20.00 24.00 NOTE
r-patched-linux-x86_64 0.1.13 0.74 12.36 13.11 NOTE
r-patched-solaris-sparc 0.1.13 138.60 NOTE
r-patched-solaris-x86 0.1.13 34.20 NOTE
r-release-linux-x86_64 0.1.13 0.97 11.81 12.78 NOTE
r-release-osx-x86_64-mavericks 0.1.13 NOTE
r-release-osx-x86_64-snowleopard 0.1.13 NOTE
r-release-windows-ix86+x86_64 0.1.13 3.00 22.00 25.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1.13 5.00 24.00 29.00 NOTE

Check Details

Version: 0.1.13
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘survival’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘foreach’ ‘iterators’ ‘proto’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.13
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.proto print.proto
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-x86

Version: 0.1.13
Check: R code for possible problems
Result: NOTE
    GMT2List: no visible global function definition for ‘%dopar%’
    GMT2List: no visible global function definition for ‘foreach’
    GMT2List: no visible global function definition for ‘iter’
    GMT2List: no visible binding for global variable ‘x’
    GetPVal : <anonymous>: no visible global function definition for
     ‘coxph’
    MetaQC: no visible global function definition for ‘proto’
    MetaQC: no visible global function definition for ‘registerDoMC’
    MetaQC: no visible global function definition for ‘registerDoSNOW’
    MetaQC: no visible global function definition for ‘makeCluster’
    MetaQC : .Initialize: no visible global function definition for ‘%do%’
    MetaQC : .Initialize: no visible global function definition for
     ‘foreach’
    MetaQC : .Initialize: no visible global function definition for ‘iter’
    MetaQC : .FilterGenes: no visible global function definition for
     ‘%dopar%’
    MetaQC : .FilterGenes: no visible global function definition for
     ‘foreach’
    MetaQC : .FilterGenes: no visible global function definition for ‘iter’
    MetaQC : .FilterGenes: no visible binding for global variable ‘d’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘%dopar%’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘foreach’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘iter’
    MetaQC : .ConvertToGeneSetIdx: no visible global function definition
     for ‘%do%’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘g’
    MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
     ‘d’
    MetaQC : .CalcPval: no visible global function definition for ‘%do%’
    MetaQC : .CalcPval: no visible global function definition for ‘foreach’
    MetaQC : .CalcPval: no visible binding for global variable ‘i’
    MetaQC : .CalcPval: no visible global function definition for ‘%dopar%’
    MetaQC : .CalcPval: no visible binding for global variable ‘w’
    MetaQC : .CalcPval: no visible global function definition for ‘iter’
    MetaQC : .CalcPval: no visible binding for global variable ‘j’
    MetaQC : .CalcPval: no visible binding for global variable ‘b’
    MetaQC : EQC: no visible global function definition for ‘%do%’
    MetaQC : EQC: no visible global function definition for ‘foreach’
    MetaQC : EQC: no visible global function definition for ‘%dopar%’
    MetaQC : EQC: no visible global function definition for ‘iter’
    MetaQC : EQC: no visible binding for global variable ‘g’
    MetaQC : EQC: no visible binding for global variable ‘w’
    MetaQC : AQCg: no visible global function definition for ‘%dopar%’
    MetaQC : AQCg: no visible global function definition for ‘foreach’
    MetaQC : AQCg: no visible binding for global variable ‘i’
    MetaQC : AQCp: no visible global function definition for ‘%dopar%’
    MetaQC : AQCp: no visible global function definition for ‘foreach’
    MetaQC : AQCp: no visible binding for global variable ‘i’
    MetaQC : CQCg: no visible global function definition for ‘%dopar%’
    MetaQC : CQCg: no visible global function definition for ‘foreach’
    MetaQC : CQCg: no visible global function definition for ‘iter’
    MetaQC : CQCg: no visible binding for global variable ‘dat’
    MetaQC : CQCg: no visible binding for global variable ‘pv’
    MetaQC : CQCg: no visible binding for global variable ‘i’
    MetaQC : CQCp: no visible global function definition for ‘%dopar%’
    MetaQC : CQCp: no visible global function definition for ‘foreach’
    MetaQC : CQCp: no visible global function definition for ‘iter’
    MetaQC : CQCp: no visible binding for global variable ‘dat’
    MetaQC : CQCp: no visible binding for global variable ‘pv’
    MetaQC : CQCp: no visible global function definition for ‘%do%’
    MetaQC : CQCp: no visible binding for global variable ‘ii’
    MetaQC : CQCp: no visible binding for global variable ‘jj’
    MetaQC : CQCp: no visible binding for global variable ‘i’
    MetaQC : IQC: no visible global function definition for ‘%dopar%’
    MetaQC : IQC: no visible global function definition for ‘foreach’
    MetaQC : IQC: no visible binding for global variable ‘i’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘%dopar%’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘foreach’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘iter’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘ii’
    MetaQC : .CalcDistOfStudies: no visible global function definition for
     ‘%do%’
    MetaQC : .CalcDistOfStudies: no visible binding for global variable
     ‘jj’
    MetaQC : .CalcScores: no visible global function definition for ‘%do%’
    MetaQC : .CalcScores: no visible global function definition for
     ‘foreach’
    MetaQC : .CalcScores: no visible global function definition for ‘iter’
    MetaQC : .CalcScores: no visible binding for global variable ‘d’
    requireAll: no visible binding for global variable ‘biocLite’
    requireAll: no visible global function definition for ‘biocLite’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.13
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.13
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘FactoMineR’
Flavor: r-release-osx-x86_64-snowleopard