CRAN Package Check Results for Package MethComp

Last updated on 2014-08-28 23:48:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.22 1.38 38.10 39.48 NOTE
r-devel-linux-x86_64-debian-gcc 1.22 1.38 37.96 39.34 NOTE
r-devel-linux-x86_64-fedora-clang 1.22 92.55 NOTE
r-devel-linux-x86_64-fedora-gcc 1.22 89.17 NOTE
r-devel-osx-x86_64-clang 1.22 68.10 NOTE
r-devel-windows-ix86+x86_64 1.22 5.00 58.00 63.00 NOTE
r-patched-linux-x86_64 1.22 1.43 42.35 43.78 NOTE
r-patched-solaris-sparc 1.22 538.60 NOTE
r-patched-solaris-x86 1.22 122.10 NOTE
r-release-linux-ix86 1.22 1.98 54.45 56.43 NOTE
r-release-linux-x86_64 1.22 1.46 43.42 44.89 NOTE
r-release-osx-x86_64-mavericks 1.22 NOTE
r-release-osx-x86_64-snowleopard 1.22 NOTE
r-release-windows-ix86+x86_64 1.22 5.00 61.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 1.22 4.00 60.00 64.00 NOTE

Check Details

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' calls which should be '::':
     ‘base:::subset.data.frame’ ‘base:::transform.data.frame’
     ‘coda:::mcmc’ ‘coda:::mcmc.list’ ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.22
Check: R code for possible problems
Result: NOTE
    AltReg: no visible global function definition for ‘lme’
    BA.est: no visible global function definition for ‘lmeControl’
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘coda.samples’
    MCmcmc: no visible global function definition for ‘bugs’
    MCmcmc: no visible global function definition for ‘read.bugs’
    VC.est: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lme’
    VC.est.fixed: no visible global function definition for ‘pdIdent’
    VC.est.fixed: no visible global function definition for ‘varIdent’
    VC.est.fixed: no visible global function definition for ‘pdDiag’
    VC.est.fixed: no visible global function definition for ‘pdSymm’
    VC.est.random: no visible global function definition for ‘lmeControl’
    VC.est.random: no visible global function definition for ‘lme’
    VC.est.random: no visible global function definition for ‘pdBlocked’
    VC.est.random: no visible global function definition for ‘pdIdent’
    VC.est.random: no visible global function definition for ‘varIdent’
    VC.est.random: no visible global function definition for ‘ranef’
    VC.est.random: no visible global function definition for ‘pdDiag’
    addcols.mcmc: no visible global function definition for ‘as.mcmc.list’
    find.mean: no visible global function definition for ‘varnames’
    find.vars: no visible global function definition for ‘varnames’
    mcmc.MCmcmc: no visible global function definition for ‘as.mcmc’
    pairs.MCmcmc: no visible global function definition for ‘nchain’
    pairs.MCmcmc: no visible global function definition for ‘niter’
    pairs.MCmcmc: no visible global function definition for ‘varnames’
    post.mean: no visible global function definition for ‘as.mcmc’
    post.mean: no visible global function definition for ‘densityplot’
    post.sd: no visible global function definition for ‘as.mcmc’
    post.sd: no visible global function definition for ‘densityplot’
    subset.MCmcmc : char.2.num: no visible global function definition for
     ‘varnames’
    subset.MCmcmc: no visible global function definition for ‘nchain’
    trace.mean: no visible global function definition for ‘xyplot’
    trace.sd: no visible global function definition for ‘xyplot’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.22
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 1.22
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘BRugs’ ‘rjags’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.22
Check: R code for possible problems
Result: NOTE
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘coda.samples’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to 'nlme' which was already attached by Depends.
     Please remove these calls from your code.
    ':::' calls which should be '::':
     'base:::subset.data.frame' 'base:::transform.data.frame'
     'coda:::mcmc' 'coda:::mcmc.list' 'nlme:::VarCorr'
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     'VC.est.fixed' 'VC.est.random'
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard