CRAN Package Check Results for Package ModelMap

Last updated on 2016-07-01 10:48:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 3.3.2 6.26 93.57 99.83 NOTE --no-vignettes
r-devel-linux-x86_64-fedora-clang 3.3.2 421.36 WARN
r-devel-linux-x86_64-fedora-gcc 3.3.2 419.63 WARN
r-devel-osx-x86_64-clang 3.3.2 311.86 WARN
r-devel-windows-ix86+x86_64 3.3.2 16.00 342.00 358.00 WARN
r-patched-linux-x86_64 3.3.2 7.77 95.18 102.95 NOTE --no-vignettes
r-patched-solaris-sparc 3.3.2 1080.80 NOTE --no-vignettes
r-patched-solaris-x86 3.3.2 546.10 WARN
r-release-linux-x86_64 3.3.2 6.28 90.91 97.19 NOTE --no-vignettes
r-release-osx-x86_64-mavericks 3.3.2 ERROR
r-release-windows-ix86+x86_64 3.3.2 19.00 359.00 378.00 WARN
r-oldrel-windows-ix86+x86_64 3.3.2 16.00 556.00 572.00 ERROR

Check Details

Version: 3.3.2
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘quantregForest::varImpPlot.qrf’
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-release-linux-x86_64

Version: 3.3.2
Check: dependencies in R code
Result: NOTE
    Missing or unexported object: ‘quantregForest::varImpPlot.qrf’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.3.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: randomForest
    randomForest 4.6-12
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.1-10, (SVN revision 622)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 1.11.4, released 2016/01/25
     Path to GDAL shared files: /usr/share/gdal
     Loaded PROJ.4 runtime: Rel. 4.8.0, 6 March 2012, [PJ_VERSION: 480]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.2-3
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    
    Error: processing vignette 'Vquantile.Rnw' failed with diagnostics:
     chunk 16 (label = Ex1 Model Diagnostics)
    Error in names(QRF.PRED) <- c("obs", quantlab) :
     'names' attribute [7] must be the same length as the vector [4]
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.3.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    
    Error: processing vignette 'Vquantile.Rnw' failed with diagnostics:
     chunk 16 (label = Ex1 Model Diagnostics)
    Error in names(QRF.PRED) <- c("obs", quantlab) :
     'names' attribute [7] must be the same length as the vector [4]
    Execution halted
Flavors: r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 3.3.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: randomForest
    randomForest 4.6-12
    Type rfNews() to see new features/changes/bug fixes.
    Loading required package: raster
    Loading required package: sp
    Loading required package: rgdal
    rgdal: version: 1.1-10, (SVN revision 622)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 1.11.3, released 2015/09/16
     Path to GDAL shared files: /usr/local/share/gdal
     Loaded PROJ.4 runtime: Rel. 4.9.2, 08 September 2015, [PJ_VERSION: 492]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.2-3
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    
    Error: processing vignette 'Vquantile.Rnw' failed with diagnostics:
     chunk 16 (label = Ex1 Model Diagnostics)
    Error in names(QRF.PRED) <- c("obs", quantlab) :
     'names' attribute [7] must be the same length as the vector [4]
    Execution halted
Flavor: r-patched-solaris-x86

Version: 3.3.2
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘Vquantile.Rnw’
     ...
    > QRF.sage <- model.build(model.type = "QRF", qdata.trainfn = qdata.trainfn,
    + folder = folder, unique.rowname = unique.rowname, MODELfn = MODELf .... [TRUNCATED]
    
    > QRF.pinyon.pred <- model.diagnostics(model.obj = QRF.pinyon,
    + qdata.testfn = qdata.testfn, folder = folder, MODELfn = MODELfn.pinyon,
    + u .... [TRUNCATED]
    
     When sourcing ‘Vquantile.R’:
    Error: 'names' attribute [7] must be the same length as the vector [4]
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-oldrel-windows-ix86+x86_64

Version: 3.3.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     OUTPUTfn VModelMapEx1a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx1b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx1b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx2b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx2b_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx3_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx3_map.img
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in model.SGB(qdata = qdata, predList = predList, response.name = response.name, :
     ModelMap currently uses OOB estimation to determine optimal number of trees in SGB model when calling 'gbm.perf' in the gbm package however OOB generally underestimates the optimal number of iterations although predictive performance is reasonably competitive however using cv.folds>0 when calling gbm usually results in improved predictive performance but is not yet supported in ModelMap
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4a_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4a_map.img
    Warning in FNcheck(OUTPUTfn = OUTPUTfn, folder = folder, ERROR.NAME = "OUTPUTfn") :
     OUTPUTfn VModelMapEx4b_map does not include an extension, using default extension of '.img'. New OUTPUTfn is VModelMapEx4b_map.img
    Warning in file.remove("Rplots.pdf") :
     cannot remove file 'Rplots.pdf', reason 'No such file or directory'
    
    Error: processing vignette 'Vquantile.Rnw' failed with diagnostics:
     chunk 16 (label = Ex1 Model Diagnostics)
    Error in names(QRF.PRED) <- c("obs", quantlab) :
     'names' attribute [7] must be the same length as the vector [4]
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-oldrel-windows-ix86+x86_64