CRAN Package Check Results for Package NMF

Last updated on 2016-02-10 10:47:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.20.6 6.72 176.20 182.93 WARN
r-devel-linux-x86_64-fedora-clang 0.20.6 385.77 WARN
r-devel-linux-x86_64-fedora-gcc 0.20.6 364.27 WARN
r-devel-osx-x86_64-clang 0.20.6 497.23 NOTE
r-devel-windows-ix86+x86_64 0.20.6 34.00 463.00 497.00 NOTE
r-patched-linux-x86_64 0.20.6 7.11 180.78 187.89 NOTE
r-patched-solaris-sparc 0.20.6 1076.90 NOTE --no-tests --no-vignettes
r-patched-solaris-x86 0.20.6 224.50 NOTE --no-build-vignettes
r-release-linux-x86_64 0.20.6 7.08 183.37 190.44 WARN
r-release-osx-x86_64-mavericks 0.20.6 NOTE
r-release-windows-ix86+x86_64 0.20.6 32.00 476.00 508.00 NOTE
r-oldrel-windows-ix86+x86_64 0.20.6 40.00 628.00 668.00 WARN

Check Details

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘synchronicity’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.20.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Error in citation(x) : package 'synchronicity' not found
    Converted 9 of 10 package citations to BibTeX
    Writing 11 Bibtex entries ... OK
    Results written to file 'Rpackages.bib'
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘NMF-vignette.tex’ failed.
    LaTeX errors:
    ! Undefined control sequence.
    <argument> ...nameprefix {ichi}\isdot \ifprefchar
     {} {} {\ifuseprefix {\bibn...
    l.2304 \printbibliography[heading=bibintoc]
    
    ! Undefined control sequence.
    <argument> ...ibnameprefix {de}\isdot \ifprefchar
     {} {} {\ifuseprefix {\bibn...
    l.2304 \printbibliography[heading=bibintoc]
    
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘RcppOctave’ ‘synchronicity’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘RcppOctave’, ‘synchronicity’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘synchronicity’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave : .local: no visible global function
     definition for ‘fstop’
    evar,ANY : .local: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘n’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘RNGobj’
    rss,matrix : .local: no visible binding for global variable ‘Biobase’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in citation(x) : package 'synchronicity' not found
    Converted 9 of 10 package citations to BibTeX
    Writing 11 Bibtex entries ... OK
    Results written to file 'Rpackages.bib'
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘NMF-vignette.tex’ failed.
    LaTeX errors:
    ! Undefined control sequence.
    <argument> ...nameprefix {ichi}\isdot \ifprefchar
     {} {} {\ifuseprefix {\bibn...
    l.2304 \printbibliography[heading=bibintoc]
    
    ! Undefined control sequence.
    <argument> ...ibnameprefix {de}\isdot \ifprefchar
     {} {} {\ifuseprefix {\bibn...
    l.2304 \printbibliography[heading=bibintoc]
    
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘RcppOctave’ ‘synchronicity’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave : .local: no visible global function
     definition for ‘fstop’
    evar,ANY : .local: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘n’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘RNGobj’
    rss,matrix : .local: no visible binding for global variable ‘Biobase’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘RcppOctave’, ‘synchronicity’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-build-vignettes
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘RcppOctave’ ‘synchronicity’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave : .local: no visible global function
     definition for ‘fstop’
    evar,ANY : .local: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘n’
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable ‘RNGobj’
    rss,matrix : .local: no visible binding for global variable ‘Biobase’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘RcppOctave’, ‘synchronicity’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import by ‘ggplot2::unit’ when loading ‘NMF’
     Warning: replacing previous import by ‘ggplot2::arrow’ when loading ‘NMF’
Flavor: r-release-linux-x86_64

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RcppOctave’ ‘doMPI’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'RcppOctave' 'doMPI' 'synchronicity'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import by 'ggplot2::arrow' when loading 'NMF'
     Warning: replacing previous import by 'ggplot2::unit' when loading 'NMF'
Flavor: r-oldrel-windows-ix86+x86_64