CRAN Package Check Results for Package NMF

Last updated on 2015-05-27 11:49:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.20.6 6.74 214.03 220.76 OK
r-devel-linux-x86_64-debian-gcc 0.20.6 7.23 210.79 218.02 OK
r-devel-linux-x86_64-fedora-clang 0.20.6 283.01 NOTE
r-devel-linux-x86_64-fedora-gcc 0.20.6 269.81 OK
r-devel-osx-x86_64-clang 0.20.6 220.37 NOTE
r-devel-windows-ix86+x86_64 0.20.6 33.00 353.00 386.00 NOTE
r-patched-linux-x86_64 0.20.5 7.03 134.44 141.47 ERROR
r-patched-solaris-sparc 0.20.6 1001.00 NOTE --no-tests --no-vignettes
r-patched-solaris-x86 0.20.6 202.50 NOTE --no-build-vignettes
r-release-linux-x86_64 0.20.6 6.83 217.85 224.68 OK
r-release-osx-x86_64-mavericks 0.20.6 NOTE
r-release-osx-x86_64-snowleopard 0.20.5 ERROR
r-release-windows-ix86+x86_64 0.20.6 24.00 353.00 377.00 NOTE
r-oldrel-windows-ix86+x86_64 0.20.6 32.00 490.00 522.00 NOTE

Check Details

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'RcppOctave' 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: 'RcppOctave', 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.20.5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Biobase’ ‘bigmemory’ ‘devtools’ ‘knitr’ ‘synchronicity’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavor: r-patched-linux-x86_64

Version: 0.20.5
Check: R code for possible problems
Result: NOTE
    devnmf: no visible global function definition for ‘load_all’
    nmfReport: no visible global function definition for ‘knit2html’
    posICA: no visible binding for global variable ‘fastICA’
    posICA: no visible global function definition for ‘fastICA’
    runit.lsnmf: no visible global function definition for ‘checkTrue’
    setupLibPaths: no visible global function definition for ‘load_all’
    test.match_atrack : .check: no visible global function definition for
     ‘checkEquals’
Flavor: r-patched-linux-x86_64

Version: 0.20.5
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: NMF-package
    > ### Title: Algorithms and framework for Nonnegative Matrix Factorization
    > ### (NMF).
    > ### Aliases: NMF NMF-package
    > ### Keywords: package
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # generate a synthetic dataset with known classes
    > n <- 50; counts <- c(5, 5, 8);
    > V <- syntheticNMF(n, counts)
    >
    > # perform a 3-rank NMF using the default algorithm
    > res <- nmf(V, 3)
    >
    > basismap(res)
    Error in process_tracks(x, tracks, annRow, annCol) :
     Invalid special annotation track name ['basis']. Should partially match one of 'basis', ':basis', 'basis:'.
    Calls: basismap -> basismap -> .local -> process_tracks
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.20.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Quitting from lines 901-902 (NMF-vignette.Rnw)
    Error: processing vignette ‘NMF-vignette.Rnw’ failed with diagnostics:
    Invalid special annotation track name ['basis:', 'consensus:', 'silhouette:']. Should partially match one of 'basis:', 'consensus:', 'silhouette:'.
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘RcppOctave’ ‘synchronicity’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘RcppOctave’, ‘synchronicity’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-build-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RcppOctave’ ‘doMPI’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.5
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘pkgmaker’ ‘rngtools’ ‘ggplot2’
    
    Packages suggested but not available for checking:
     ‘RcppOctave’ ‘doMPI’ ‘devtools’ ‘knitr’ ‘Biobase’
    
    VignetteBuilder package required for checking but not installed: ‘knitr’
    
    Files named as vignettes but with no recognized vignette engine:
     ‘inst/doc/NMF-unitTests.Rnw’
     ‘inst/doc/NMF-vignette.Rnw’
     ‘inst/doc/heatmaps.Rnw’
    (Is a VignetteBuilder field missing?)
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'RcppOctave' 'doMPI' 'bigmemory' 'synchronicity'
Flavor: r-oldrel-windows-ix86+x86_64