CRAN Package Check Results for Package NMF

Last updated on 2016-12-08 18:47:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.20.6 8.93 319.04 327.97 NOTE
r-devel-linux-x86_64-debian-gcc 0.20.6 8.04 316.46 324.50 NOTE
r-devel-linux-x86_64-fedora-clang 0.20.6 699.54 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.20.6 699.46 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.20.6 429.36 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.20.6 22.00 551.00 573.00 NOTE
r-patched-linux-x86_64 0.20.6 6.68 302.61 309.29 NOTE
r-patched-solaris-sparc 0.20.6 1094.20 NOTE --no-tests --no-vignettes
r-patched-solaris-x86 0.20.6 181.70 ERROR --no-build-vignettes
r-release-linux-x86_64 0.20.6 7.05 302.82 309.88 NOTE
r-release-osx-x86_64-mavericks 0.20.6 NOTE
r-release-windows-ix86+x86_64 0.20.6 23.00 457.00 480.00 NOTE
r-oldrel-windows-ix86+x86_64 0.20.6 42.00 639.00 681.00 NOTE

Check Details

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.20.6
Flags: --no-stop-on-test-error
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-macos-x86_64-clang

Version: 0.20.6
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.20.6
Flags: --no-stop-on-test-error
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-macos-x86_64-clang

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-build-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getRNG1
    > ### Title: Extracting RNG Data from NMF Objects
    > ### Aliases: .getRNG getRNG1 getRNG1-methods getRNG1,NMFfitX1-method
    > ### getRNG1,NMFfitX-method getRNG1,NMFfitXn-method .getRNG-methods
    > ### .getRNG,NMFfitXn-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # For multiple NMF runs, the RNG settings used for the first run is also stored
    > V <- rmatrix(20,10)
    > res <- nmf(V, 3, nrun=4)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/16]
    Error in big.matrix(nrow = nrow(x), ncol = ncol(x), type = type, init = NULL, :
     Error: memory could not be allocated for instance of type big.matrix
    Calls: nmf ... gVariable -> <Anonymous> -> <Anonymous> -> big.matrix
    Timing stopped at: 0.018 0.029 0.049
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RcppOctave’ ‘doMPI’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave : .local: no visible global function
     definition for 'fstop'
    evar,ANY : .local: no visible binding for global variable 'Biobase'
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable 'n'
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable 'RNGobj'
    rss,matrix : .local: no visible binding for global variable 'Biobase'
Flavor: r-oldrel-windows-ix86+x86_64