CRAN Package Check Results for Package NMF

Last updated on 2016-05-04 13:50:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.20.6 6.58 239.64 246.22 NOTE
r-devel-linux-x86_64-fedora-clang 0.20.6 470.19 NOTE
r-devel-linux-x86_64-fedora-gcc 0.20.6 458.85 NOTE
r-devel-osx-x86_64-clang 0.20.6 444.29 NOTE
r-devel-windows-ix86+x86_64 0.20.6 19.00 617.00 636.00 NOTE
r-patched-linux-x86_64 0.20.6 6.75 233.67 240.43 NOTE
r-patched-solaris-sparc 0.20.6 1157.30 NOTE --no-tests --no-vignettes
r-patched-solaris-x86 0.20.6 215.90 NOTE --no-build-vignettes
r-release-linux-x86_64 0.20.6 6.85 238.00 244.85 NOTE
r-release-osx-x86_64-mavericks 0.20.6 NOTE
r-release-windows-ix86+x86_64 0.20.6 19.00 617.00 636.00 NOTE
r-oldrel-windows-ix86+x86_64 0.20.6 34.00 485.00 519.00 WARN

Check Details

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'synchronicity'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-tests --no-vignettes
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-patched-solaris-sparc

Version: 0.20.6
Flags: --no-build-vignettes
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave: no visible global function definition for
     ‘fstop’
    evar,ANY: no visible binding for global variable ‘Biobase’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘n’
    nmf,matrix-numeric-NMFStrategy : run.all: no visible binding for global
     variable ‘RNGobj’
    rss,matrix: no visible binding for global variable ‘Biobase’
    Undefined global functions or variables:
     Biobase RNGobj fstop n
Flavor: r-patched-solaris-x86

Version: 0.20.6
Flags: --no-build-vignettes
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘RcppOctave’
Flavor: r-patched-solaris-x86

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘RcppOctave’ ‘doMPI’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20.6
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'RcppOctave' 'doMPI' 'synchronicity'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import by 'ggplot2::arrow' when loading 'NMF'
     Warning: replacing previous import by 'ggplot2::unit' when loading 'NMF'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: R code for possible problems
Result: NOTE
    algorithm,NMFStrategyOctave : .local: no visible global function
     definition for 'fstop'
    evar,ANY : .local: no visible binding for global variable 'Biobase'
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable 'n'
    nmf,matrix-numeric-NMFStrategy : .local : run.all: no visible binding
     for global variable 'RNGobj'
    rss,matrix : .local: no visible binding for global variable 'Biobase'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: 'RcppOctave', 'synchronicity'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.20.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    c/amsfonts/cm/cmcsc10.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cme
    x10.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmitt10.pfb><D:/Compi
    ler/texmf/fonts/type1/public/amsfonts/cm/cmmi10.pfb><D:/Compiler/texmf/fonts/ty
    pe1/public/amsfonts/cm/cmmi5.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts
    /cm/cmmi7.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmmi8.pfb><D:/C
    ompiler/texmf/fonts/type1/public/amsfonts/cm/cmr10.pfb><D:/Compiler/texmf/fonts
    /type1/public/amsfonts/cm/cmr12.pfb><D:/Compiler/texmf/fonts/type1/public/amsfo
    nts/cm/cmr17.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmr6.pfb><D:
    /Compiler/texmf/fonts/type1/public/amsfonts/cm/cmr7.pfb><D:/Compiler/texmf/font
    s/type1/public/amsfonts/cm/cmr8.pfb><D:/Compiler/texmf/fonts/type1/public/amsfo
    nts/cm/cmr9.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss8.pfb><D:
    /Compiler/texmf/fonts/type1/public/amsfonts/cm/cmssbx10.pfb><D:/Compiler/texmf/
    fonts/type1/public/amsfonts/cm/cmsy10.pfb><D:/Compiler/texmf/fonts/type1/public
    /amsfonts/cm/cmsy7.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti10
    .pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti8.pfb><D:/Compiler/t
    exmf/fonts/type1/public/amsfonts/cm/cmtt10.pfb><D:/Compiler/texmf/fonts/type1/p
    ublic/amsfonts/cm/cmtt8.pfb><D:/Compiler/texmf/fonts/type1/public/amsfonts/cm/c
    mtt9.pfb>
    Output written on NMF-vignette.pdf (37 pages, 585282 bytes).
    Transcript written on NMF-vignette.log.
    Warning: running command '"pdflatex" -interaction=nonstopmode "NMF-vignette.tex"' had status 1
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     unable to run pdflatex on 'NMF-vignette.tex'
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64