CRAN Package Check Results for Package NSA

Last updated on 2014-04-18 11:47:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.32 3.57 45.10 48.68 NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang 0.0.32 103.64 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.32 97.02 NOTE
r-devel-macosx-x86_64-clang 0.0.32 103.81 NOTE
r-devel-macosx-x86_64-gcc 0.0.32 ERROR
r-devel-windows-ix86+x86_64 0.0.32 14.00 71.00 85.00 NOTE
r-patched-linux-x86_64 0.0.32 3.75 46.33 50.08 NOTE
r-patched-solaris-sparc 0.0.32 604.90 NOTE
r-patched-solaris-x86 0.0.32 141.10 NOTE
r-release-linux-ix86 0.0.32 8.00 102.00 110.00 NOTE
r-release-linux-x86_64 0.0.32 3.66 46.26 49.92 NOTE
r-release-macosx-x86_64 0.0.32 ERROR
r-release-windows-ix86+x86_64 0.0.32 13.00 67.00 80.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.32 13.00 75.00 88.00 NOTE

Check Details

Version: 0.0.32
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘R.methodsS3’ ‘MASS’ ‘matrixStats’ ‘R.oo’ ‘R.utils’ ‘aroma.core’
     ‘aroma.affymetrix’ ‘DNAcopy’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.0.32
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘DNAcopy’ ‘MASS’ ‘R.methodsS3’ ‘R.oo’ ‘aroma.affymetrix’ ‘aroma.core’
     ‘matrixStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘incl’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.32
Check: Rd line widths
Result: NOTE
    Rd file 'NSANormalization.Rd':
     \examples lines wider than 100 characters:
     by <- 50e3; # 50kb bins; you may want to try with other amounts of smoothing xOut <- seq(from=xRange[1], to=xRange[2], by=by);
     plot(getSignals(cnCNPS), getSignals(cnSNPS), xlim=Clim, ylim=Clim); abline(a=0, b=1, col="red", lwd=2);
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.32
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘aroma.core’ ‘aroma.affymetrix’ ‘DNAcopy’
    
    Depends: includes the non-default packages:
     ‘R.methodsS3’ ‘MASS’ ‘matrixStats’ ‘R.oo’ ‘R.utils’ ‘aroma.core’
     ‘aroma.affymetrix’ ‘DNAcopy’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-macosx-x86_64-gcc, r-release-macosx-x86_64