CRAN Package Check Results for Package NSA

Last updated on 2014-07-23 15:47:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.32 3.21 39.87 43.08 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.32 4.37 39.94 44.32 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.32 105.74 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.32 100.84 NOTE
r-devel-osx-x86_64-clang 0.0.32 91.79 NOTE
r-devel-windows-ix86+x86_64 0.0.32 16.00 69.00 85.00 NOTE
r-patched-linux-x86_64 0.0.32 3.24 40.46 43.71 NOTE
r-patched-solaris-sparc 0.0.32 604.90 NOTE
r-patched-solaris-x86 0.0.32 120.80 NOTE
r-release-linux-ix86 0.0.32 4.86 62.12 66.98 NOTE
r-release-linux-x86_64 0.0.32 3.52 43.70 47.22 NOTE
r-release-osx-x86_64-mavericks 0.0.32 NOTE
r-release-osx-x86_64-snowleopard 0.0.32 NOTE
r-release-windows-ix86+x86_64 0.0.32 14.00 71.00 85.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.32 14.00 75.00 89.00 NOTE

Check Details

Version: 0.0.32
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘R.methodsS3’ ‘MASS’ ‘matrixStats’ ‘R.oo’ ‘R.utils’ ‘aroma.core’
     ‘aroma.affymetrix’ ‘DNAcopy’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 0.0.32
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘DNAcopy’ ‘MASS’ ‘R.methodsS3’ ‘R.oo’ ‘aroma.affymetrix’ ‘aroma.core’
     ‘matrixStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘incl’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.32
Check: Rd line widths
Result: NOTE
    Rd file 'NSANormalization.Rd':
     \examples lines wider than 100 characters:
     by <- 50e3; # 50kb bins; you may want to try with other amounts of smoothing xOut <- seq(from=xRange[1], to=xRange[2], by=by);
     plot(getSignals(cnCNPS), getSignals(cnSNPS), xlim=Clim, ylim=Clim); abline(a=0, b=1, col="red", lwd=2);
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc