CRAN Package Check Results for Package NanoStringNorm

Last updated on 2015-07-01 19:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.19 1.20 38.50 39.70 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.19 1.25 38.56 39.81 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.19 78.86 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.19 75.06 NOTE
r-devel-osx-x86_64-clang 1.1.19 82.33 OK
r-devel-windows-ix86+x86_64 1.1.19 5.00 63.00 68.00 NOTE
r-patched-linux-x86_64 1.1.19 1.12 38.57 39.69 OK
r-patched-solaris-sparc 1.1.19 473.00 OK
r-patched-solaris-x86 1.1.19 100.00 OK
r-release-linux-x86_64 1.1.19 1.16 39.70 40.86 OK
r-release-osx-x86_64-mavericks 1.1.19 NOTE
r-release-windows-ix86+x86_64 1.1.19 5.00 68.00 73.00 OK
r-oldrel-windows-ix86+x86_64 1.1.19 10.00 70.00 80.00 OK

Check Details

Version: 1.1.19
Check: R code for possible problems
Result: NOTE
    NanoStringNorm: no visible global function definition for
     ‘packageDescription’
    Plot.NanoStringNorm: no visible global function definition for ‘rgb’
    Plot.NanoStringNorm: no visible global function definition for ‘par’
    Plot.NanoStringNorm: no visible global function definition for ‘plot’
    Plot.NanoStringNorm: no visible global function definition for ‘points’
    Plot.NanoStringNorm: no visible global function definition for ‘lines’
    Plot.NanoStringNorm: no visible global function definition for ‘lowess’
    Plot.NanoStringNorm: no visible global function definition for ‘box’
    Plot.NanoStringNorm: no visible global function definition for ‘legend’
    Plot.NanoStringNorm: no visible global function definition for
     ‘quantile’
    Plot.NanoStringNorm: no visible global function definition for ‘sd’
    Plot.NanoStringNorm: no visible global function definition for ‘text’
    Plot.NanoStringNorm: no visible global function definition for
     ‘density’
    Plot.NanoStringNorm: no visible global function definition for
     ‘na.omit’
    Plot.NanoStringNorm: no visible global function definition for ‘axis’
    Plot.NanoStringNorm: no visible global function definition for ‘abline’
    Plot.NanoStringNorm: no visible global function definition for ‘lm’
    Plot.NanoStringNorm: no visible global function definition for ‘resid’
    Plot.NanoStringNorm: no visible global function definition for ‘mtext’
    Plot.NanoStringNorm: no visible global function definition for
     ‘segments’
    Plot.NanoStringNorm.gvis: no visible global function definition for
     ‘download.file’
    Plot.NanoStringNorm.gvis: no visible global function definition for
     ‘plot’
    background.normalization : mean.plus.2sd: no visible global function
     definition for ‘sd’
    background.normalization: no visible global function definition for
     ‘sd’
    check.trait.values : <anonymous>: no visible global function definition
     for ‘na.omit’
    get.batch.effects : t.test.pvalue: no visible global function
     definition for ‘t.test’
    get.batch.effects : t.test.pvalue: no visible global function
     definition for ‘is’
    get.beta.se.and.p: no visible global function definition for ‘coef’
    get.beta.se.and.p: no visible global function definition for ‘lm’
    get.geo.mean: no visible global function definition for ‘na.omit’
    get.mean.sd.and.cv: no visible global function definition for ‘sd’
    get.sample.summary.stats: no visible binding for global variable ‘sd’
    get.trait.summary.stats: no visible global function definition for
     ‘p.adjust’
    get.ttest.and.foldchange: no visible global function definition for
     ‘t.test’
    norm.comp : get.cv: no visible global function definition for ‘na.omit’
    norm.comp : get.cv: no visible global function definition for ‘sd’
    norm.comp : get.mean.corr: no visible global function definition for
     ‘cor’
    norm.comp : get.icc: no visible global function definition for ‘aov’
    norm.comp: no visible global function definition for ‘median’
    norm.comp: no visible global function definition for ‘rgb’
    norm.comp: no visible global function definition for ‘par’
    norm.comp: no visible global function definition for ‘hist’
    norm.comp: no visible global function definition for ‘density’
    norm.comp: no visible global function definition for ‘na.omit’
    norm.comp: no visible global function definition for ‘lines’
    norm.comp: no visible global function definition for ‘box’
    other.normalization.quantile: no visible binding for global variable
     ‘median’
    other.normalization.quantile : get.prob.from.rank: no visible global
     function definition for ‘na.omit’
    other.normalization.quantile : get.quantile: no visible global function
     definition for ‘quantile’
    other.normalization.rank.normal : <anonymous>: no visible global
     function definition for ‘qnorm’
    other.normalization.vsn: no visible global function definition for
     ‘predict’
    output.formatting: no visible global function definition for ‘na.omit’
    predict.concentration: no visible global function definition for ‘lm’
    read.markup.RCC: no visible global function definition for ‘read.table’
    sample.content.normalization: no visible global function definition for
     ‘quantile’
    sample.content.normalization: no visible global function definition for
     ‘sd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.19
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘vsn’
Flavor: r-release-osx-x86_64-mavericks