CRAN Package Check Results for Package NanoStringNorm

Last updated on 2015-08-02 11:47:29.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.19 1.27 41.00 42.27 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.19 1.12 41.92 43.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.19 81.42 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.19 77.50 NOTE
r-devel-osx-x86_64-clang 1.1.19 81.74 OK
r-devel-windows-ix86+x86_64 1.1.19 4.00 70.00 74.00 NOTE
r-patched-linux-x86_64 1.1.19 1.14 39.73 40.87 OK
r-patched-solaris-sparc 1.1.19 497.30 OK
r-patched-solaris-x86 1.1.19 102.60 OK
r-release-linux-x86_64 1.1.19 1.36 39.76 41.12 OK
r-release-osx-x86_64-mavericks 1.1.19 NOTE
r-release-windows-ix86+x86_64 1.1.19 7.00 68.00 75.00 OK
r-oldrel-windows-ix86+x86_64 1.1.19 8.00 80.00 88.00 OK

Check Details

Version: 1.1.19
Check: R code for possible problems
Result: NOTE
    NanoStringNorm: no visible global function definition for
     ‘packageDescription’
    Plot.NanoStringNorm: no visible global function definition for ‘rgb’
    Plot.NanoStringNorm: no visible global function definition for ‘par’
    Plot.NanoStringNorm: no visible global function definition for ‘plot’
    Plot.NanoStringNorm: no visible global function definition for ‘points’
    Plot.NanoStringNorm: no visible global function definition for ‘lines’
    Plot.NanoStringNorm: no visible global function definition for ‘lowess’
    Plot.NanoStringNorm: no visible global function definition for ‘box’
    Plot.NanoStringNorm: no visible global function definition for ‘legend’
    Plot.NanoStringNorm: no visible global function definition for
     ‘quantile’
    Plot.NanoStringNorm: no visible global function definition for ‘sd’
    Plot.NanoStringNorm: no visible global function definition for ‘text’
    Plot.NanoStringNorm: no visible global function definition for
     ‘density’
    Plot.NanoStringNorm: no visible global function definition for
     ‘na.omit’
    Plot.NanoStringNorm: no visible global function definition for ‘axis’
    Plot.NanoStringNorm: no visible global function definition for ‘abline’
    Plot.NanoStringNorm: no visible global function definition for ‘lm’
    Plot.NanoStringNorm: no visible global function definition for ‘resid’
    Plot.NanoStringNorm: no visible global function definition for ‘mtext’
    Plot.NanoStringNorm: no visible global function definition for
     ‘segments’
    Plot.NanoStringNorm.gvis: no visible global function definition for
     ‘download.file’
    Plot.NanoStringNorm.gvis: no visible global function definition for
     ‘plot’
    background.normalization : mean.plus.2sd: no visible global function
     definition for ‘sd’
    background.normalization: no visible global function definition for
     ‘sd’
    check.trait.values : <anonymous>: no visible global function definition
     for ‘na.omit’
    get.batch.effects : t.test.pvalue: no visible global function
     definition for ‘t.test’
    get.batch.effects : t.test.pvalue: no visible global function
     definition for ‘is’
    get.beta.se.and.p: no visible global function definition for ‘coef’
    get.beta.se.and.p: no visible global function definition for ‘lm’
    get.geo.mean: no visible global function definition for ‘na.omit’
    get.mean.sd.and.cv: no visible global function definition for ‘sd’
    get.sample.summary.stats: no visible binding for global variable ‘sd’
    get.trait.summary.stats: no visible global function definition for
     ‘p.adjust’
    get.ttest.and.foldchange: no visible global function definition for
     ‘t.test’
    norm.comp : get.cv: no visible global function definition for ‘na.omit’
    norm.comp : get.cv: no visible global function definition for ‘sd’
    norm.comp : get.mean.corr: no visible global function definition for
     ‘cor’
    norm.comp : get.icc: no visible global function definition for ‘aov’
    norm.comp: no visible global function definition for ‘median’
    norm.comp: no visible global function definition for ‘rgb’
    norm.comp: no visible global function definition for ‘par’
    norm.comp: no visible global function definition for ‘hist’
    norm.comp: no visible global function definition for ‘density’
    norm.comp: no visible global function definition for ‘na.omit’
    norm.comp: no visible global function definition for ‘lines’
    norm.comp: no visible global function definition for ‘box’
    other.normalization.quantile: no visible binding for global variable
     ‘median’
    other.normalization.quantile : get.prob.from.rank: no visible global
     function definition for ‘na.omit’
    other.normalization.quantile : get.quantile: no visible global function
     definition for ‘quantile’
    other.normalization.rank.normal : <anonymous>: no visible global
     function definition for ‘qnorm’
    other.normalization.vsn: no visible global function definition for
     ‘predict’
    output.formatting: no visible global function definition for ‘na.omit’
    predict.concentration: no visible global function definition for ‘lm’
    read.markup.RCC: no visible global function definition for ‘read.table’
    sample.content.normalization: no visible global function definition for
     ‘quantile’
    sample.content.normalization: no visible global function definition for
     ‘sd’
    Undefined global functions or variables:
     abline aov axis box coef cor density download.file hist is legend
     lines lm lowess median mtext na.omit p.adjust packageDescription par
     plot points predict qnorm quantile read.table resid rgb sd segments
     t.test text
    Consider adding
     importFrom("grDevices", "rgb")
     importFrom("graphics", "abline", "axis", "box", "hist", "legend",
     "lines", "mtext", "par", "plot", "points", "segments",
     "text")
     importFrom("methods", "is")
     importFrom("stats", "aov", "coef", "cor", "density", "lm", "lowess",
     "median", "na.omit", "p.adjust", "predict", "qnorm",
     "quantile", "resid", "sd", "t.test")
     importFrom("utils", "download.file", "packageDescription",
     "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.19
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘vsn’
Flavor: r-release-osx-x86_64-mavericks