CRAN Package Check Results for Package NeatMap

Last updated on 2016-12-09 05:49:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.6.2 2.91 33.53 36.44 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.6.2 3.73 32.79 36.51 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.6.2 68.77 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.3.6.2 66.53 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.3.6.2 50.97 NOTE
r-devel-windows-ix86+x86_64 0.3.6.2 12.00 75.00 87.00 NOTE
r-patched-linux-x86_64 0.3.6.2 2.65 28.89 31.54 NOTE
r-patched-solaris-sparc 0.3.6.2 320.30 NOTE
r-patched-solaris-x86 0.3.6.2 69.10 NOTE
r-release-linux-x86_64 0.3.6.2 2.62 28.61 31.23 NOTE
r-release-osx-x86_64-mavericks 0.3.6.2 WARN
r-release-windows-ix86+x86_64 0.3.6.2 10.00 65.00 75.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3.6.2 16.00 69.00 85.00 NOTE

Check Details

Version: 0.3.6.2
Check: R code for possible problems
Result: NOTE
    data.reduction: no visible global function definition for ‘prcomp’
    data.reduction: no visible global function definition for ‘hclust’
    data.reduction: no visible global function definition for ‘as.dist’
    data.reduction: no visible global function definition for ‘cor’
    data.reduction: no visible global function definition for ‘dist’
    heatmap1: no visible global function definition for ‘sd’
    lineplot: no visible global function definition for ‘sd’
    normalize: no visible global function definition for ‘sd’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘rgb’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘colorRamp’
    profileplot3d: no visible global function definition for ‘sd’
    profileplot3d: no visible global function definition for ‘gray’
    Undefined global functions or variables:
     as.dist colorRamp cor dist gray hclust prcomp rgb sd
    Consider adding
     importFrom("grDevices", "colorRamp", "gray", "rgb")
     importFrom("stats", "as.dist", "cor", "dist", "hclust", "prcomp", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.3.6.2
Check: compiled code
Result: NOTE
    File ‘NeatMap/libs/NeatMap.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘nMDS_R.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘nMDS_R.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.6.2
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    data.reduction: no visible global function definition for ‘prcomp’
    data.reduction: no visible global function definition for ‘hclust’
    data.reduction: no visible global function definition for ‘as.dist’
    data.reduction: no visible global function definition for ‘cor’
    data.reduction: no visible global function definition for ‘dist’
    heatmap1: no visible global function definition for ‘sd’
    lineplot: no visible global function definition for ‘sd’
    normalize: no visible global function definition for ‘sd’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘rgb’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘colorRamp’
    profileplot3d: no visible global function definition for ‘sd’
    profileplot3d: no visible global function definition for ‘gray’
    Undefined global functions or variables:
     as.dist colorRamp cor dist gray hclust prcomp rgb sd
    Consider adding
     importFrom("grDevices", "colorRamp", "gray", "rgb")
     importFrom("stats", "as.dist", "cor", "dist", "hclust", "prcomp", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.6.2
Flags: --no-stop-on-test-error
Check: compiled code
Result: NOTE
    File ‘NeatMap/libs/NeatMap.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘nMDS_R.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘nMDS_R.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.6.2
Check: compiled code
Result: NOTE
    File ‘NeatMap/libs/NeatMap.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘nMDS_R.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘nMDS_R.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-macos-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keydata.reduction: no visible global function definition for ‘prcomp’
    data.reduction: no visible global function definition for ‘hclust’
    data.reduction: no visible global function definition for ‘as.dist’
    data.reduction: no visible global function definition for ‘cor’
    data.reduction: no visible global function definition for ‘dist’
    heatmap1: no visible global function definition for ‘sd’
    lineplot: no visible global function definition for ‘sd’
    normalize: no visible global function definition for ‘sd’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘rgb’
    profileplot3d : ColorFunction: no visible global function definition
     for ‘colorRamp’
    profileplot3d: no visible global function definition for ‘sd’
    profileplot3d: no visible global function definition for ‘gray’
    Undefined global functions or variables:
     as.dist colorRamp cor dist gray hclust prcomp rgb sd
    Consider adding
     importFrom("grDevices", "colorRamp", "gray", "rgb")
     importFrom("stats", "as.dist", "cor", "dist", "hclust", "prcomp", "sd")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.3.6.2
Check: compiled code
Result: NOTE
    File 'NeatMap/libs/i386/NeatMap.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'nMDS_R.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'nMDS_R.o'
    File 'NeatMap/libs/x64/NeatMap.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'nMDS_R.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'nMDS_R.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64