CRAN Package Check Results for Package OptInterim

Last updated on 2017-06-27 16:46:57.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.0.1 1.09 26.74 27.83 NOTE
r-devel-linux-x86_64-debian-gcc 3.0.1 1.02 24.77 25.79 NOTE
r-devel-linux-x86_64-fedora-clang 3.0.1 46.39 NOTE
r-devel-linux-x86_64-fedora-gcc 3.0.1 44.33 NOTE
r-devel-windows-ix86+x86_64 3.0.1 5.00 53.00 58.00 NOTE
r-patched-linux-x86_64 3.0.1 1.24 25.68 26.92 NOTE
r-patched-solaris-sparc 3.0.1 275.60 NOTE
r-patched-solaris-x86 3.0.1 54.80 NOTE
r-release-linux-x86_64 3.0.1 1.10 25.21 26.31 NOTE
r-release-windows-ix86+x86_64 3.0.1 4.00 68.00 72.00 NOTE
r-release-osx-x86_64 3.0.1 NOTE
r-oldrel-windows-ix86+x86_64 3.0.1 4.00 63.00 67.00 NOTE
r-oldrel-osx-x86_64 3.0.1 NOTE

Check Details

Version: 3.0.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.0.1
Check: R code for possible problems
Result: NOTE
    FixDes: no visible global function definition for ‘qnorm’
    OptimDes: no visible global function definition for ‘optimize’
    OptimDes: no visible global function definition for ‘flush.console’
    OptimDes: no visible global function definition for ‘qlogis’
    OptimDes: no visible global function definition for ‘optim’
    OptimDes: no visible global function definition for ‘plogis’
    SimDes: no visible global function definition for ‘qnorm’
    SimDes: no visible global function definition for ‘pweibull’
    SimDes: no visible global function definition for ‘qbinom’
    SimDes: no visible global function definition for ‘pbinom’
    SimDes: no visible global function definition for ‘runif’
    SimDes: no visible global function definition for ‘uniroot’
    SimDes: no visible global function definition for ‘rbinom’
    SimDes: no visible global function definition for ‘rweibull’
    SimDes: no visible global function definition for ‘fisher.test’
    f.Des: no visible global function definition for ‘uniroot’
    f.Des: no visible global function definition for ‘qnorm’
    f.Des: no visible global function definition for ‘pnorm’
    f.DesWrap: no visible global function definition for ‘plogis’
    np.OptimDes: no visible global function definition for ‘optimize’
    np.OptimDes: no visible global function definition for ‘qlogis’
    np.OptimDes: no visible global function definition for ‘optim’
    np.OptimDes: no visible global function definition for ‘plogis’
    plot.OptimDes: no visible global function definition for ‘pnorm’
    powC1: no visible global function definition for ‘pnorm’
    powC2: no visible global function definition for ‘pnorm’
    powC2L: no visible global function definition for ‘pnorm’
    print.OptimDes: no visible global function definition for ‘pnorm’
    sig2: no visible global function definition for ‘integrate’
    single.exact: no visible global function definition for ‘qbinom’
    single.exact: no visible global function definition for ‘pbinom’
    spfun: no visible global function definition for ‘pnorm’
    spfun: no visible global function definition for ‘qnorm’
    Undefined global functions or variables:
     fisher.test flush.console integrate optim optimize pbinom plogis
     pnorm pweibull qbinom qlogis qnorm rbinom runif rweibull uniroot
    Consider adding
     importFrom("stats", "fisher.test", "integrate", "optim", "optimize",
     "pbinom", "plogis", "pnorm", "pweibull", "qbinom", "qlogis",
     "qnorm", "rbinom", "runif", "rweibull", "uniroot")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.0.1
Check: Rd line widths
Result: NOTE
    Rd file 'TestStage.Rd':
     \examples lines wider than 100 characters:
     object1 <- OptimDes(B.init,m.init,alpha,beta,param,x,target="EDA",sf="futility",num.arm=1,num.stage=2)
     mda <- ifelse(l>1,B.init[l-1]+(B.init[l]-B.init[l-1])*(n-sum(m.init[1:(l-1)]))/m.init[l],B.init[l]*(n/m.init[l]))
    
    Rd file 'np.OptimDes.Rd':
     \examples lines wider than 100 characters:
     object14 <- np.OptimDes(B.init,m.init,alpha,beta,param,x,pt=1.1,target="ETSL",sf="futility",num.arm=1,num.stage=2)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.0.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: mvtnorm
    Loading required package: clinfun
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'OptInterim.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `lastpage.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.17 \usepackage
     {algorithm2e}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64