CRAN Package Check Results for Package PAGI

Last updated on 2014-09-01 11:49:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.76 292.73 294.50 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.56 271.04 272.60 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 308.96 NOTE --no-build-vignettes
r-devel-linux-x86_64-fedora-gcc 1.0 291.20 NOTE --no-build-vignettes
r-devel-osx-x86_64-clang 1.0 232.25 NOTE --no-build-vignettes
r-devel-windows-ix86+x86_64 1.0 6.00 431.00 437.00 NOTE
r-patched-linux-x86_64 1.0 1.64 316.46 318.09 OK
r-patched-solaris-sparc 1.0 196.30 NOTE --no-vignettes
r-patched-solaris-x86 1.0 467.50 NOTE --no-build-vignettes
r-release-linux-ix86 1.0 2.48 360.88 363.36 NOTE
r-release-linux-x86_64 1.0 1.75 309.03 310.78 OK
r-release-osx-x86_64-mavericks 1.0 OK
r-release-osx-x86_64-snowleopard 1.0 OK
r-release-windows-ix86+x86_64 1.0 4.00 407.00 411.00 OK
r-oldrel-windows-ix86+x86_64 1.0 7.00 368.00 375.00 OK

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0
Flags: --no-build-vignettes
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-sparc

Version: 1.0
Flags: --no-build-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-x86

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-release-linux-ix86