CRAN Package Check Results for Package PAGI

Last updated on 2016-06-27 06:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.0 1.56 141.95 143.50 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 223.21 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 219.00 NOTE
r-devel-osx-x86_64-clang 1.0 170.42 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 207.00 212.00 NOTE
r-patched-linux-x86_64 1.0 1.59 146.74 148.33 NOTE
r-patched-solaris-sparc 1.0 156.00 NOTE --no-vignettes
r-patched-solaris-x86 1.0 383.00 NOTE --no-build-vignettes
r-release-linux-x86_64 1.0 1.56 148.88 150.44 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 6.00 207.00 213.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 7.00 505.00 512.00 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible global function definition for ‘p.adjust’
    PAGI.Main: no visible global function definition for ‘pt’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
    Undefined global functions or variables:
     ExampleData PAGIData p.adjust pt
    Consider adding
     importFrom("stats", "p.adjust", "pt")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-sparc

Version: 1.0
Flags: --no-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavor: r-patched-solaris-sparc

Version: 1.0
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible global function definition for ‘p.adjust’
    PAGI.Main: no visible global function definition for ‘pt’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
    Undefined global functions or variables:
     ExampleData PAGIData p.adjust pt
    Consider adding
     importFrom("stats", "p.adjust", "pt")
    to your NAMESPACE file.
Flavor: r-patched-solaris-sparc

Version: 1.0
Flags: --no-build-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-patched-solaris-x86

Version: 1.0
Flags: --no-build-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavor: r-patched-solaris-x86

Version: 1.0
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible global function definition for ‘p.adjust’
    PAGI.Main: no visible global function definition for ‘pt’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
    Undefined global functions or variables:
     ExampleData PAGIData p.adjust pt
    Consider adding
     importFrom("stats", "p.adjust", "pt")
    to your NAMESPACE file.
Flavor: r-patched-solaris-x86

Version: 1.0
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable 'PAGIData'
    CalGIF2: no visible binding for global variable 'PAGIData'
    PAGI.Main: no visible binding for global variable 'PAGIData'
    getclass.labels: no visible binding for global variable 'ExampleData'
    getdataset: no visible binding for global variable 'ExampleData'
Flavor: r-oldrel-windows-ix86+x86_64