CRAN Package Check Results for Package PAGI

Last updated on 2015-04-01 19:48:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.52 277.21 278.74 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.48 256.65 258.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 265.74 NOTE --no-build-vignettes
r-devel-linux-x86_64-fedora-gcc 1.0 250.19 NOTE --no-build-vignettes
r-devel-osx-x86_64-clang 1.0 219.97 NOTE --no-build-vignettes
r-prerel-windows-ix86+x86_64 1.0 5.00 353.00 358.00 NOTE
r-prerel-linux-x86_64 1.0 1.47 250.18 251.65 NOTE
r-prerel-solaris-sparc 1.0 161.90 NOTE --no-vignettes
r-prerel-solaris-x86 1.0 438.00 NOTE --no-build-vignettes
r-release-linux-x86_64 1.0 1.67 278.40 280.07 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 OK
r-release-windows-ix86+x86_64 1.0 5.00 426.00 431.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 6.00 392.00 398.00 OK

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-prerel-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Flags: --no-build-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-solaris-x86

Version: 1.0
Flags: --no-build-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-solaris-x86

Version: 1.0
Flags: --no-build-vignettes
Check: Rd line widths
Result: NOTE
    Rd file 'CalGIF.Rd':
     \examples lines wider than 100 characters:
     ###calculate the global influence factor (GIF) by using the random walk with restart (RWR) algorithm###
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
     #Each element is the GIF score and whose name correspond to gene symbol in the gene expression data.
    
    Rd file 'PAGI.Main.Rd':
     \examples lines wider than 100 characters:
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
     #Its columns include "Gene number in the (sorted) pathway", "gene symbol from the gene express data",
     #"location of the gene in the sorted gene list", "the T-score of gene between two biological states",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-prerel-solaris-sparc

Version: 1.0
Flags: --no-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavor: r-prerel-solaris-sparc

Version: 1.0
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    CalGIF: no visible binding for global variable ‘PAGIData’
    CalGIF2: no visible binding for global variable ‘PAGIData’
    PAGI.Main: no visible binding for global variable ‘PAGIData’
    getclass.labels: no visible binding for global variable ‘ExampleData’
    getdataset: no visible binding for global variable ‘ExampleData’
Flavor: r-prerel-solaris-sparc

Version: 1.0
Flags: --no-build-vignettes
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     data 1.6Mb
     localdata 3.1Mb
Flavor: r-prerel-solaris-x86