CRAN Package Check Results for Package PF

Last updated on 2015-07-28 15:48:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 9.5 1.60 37.04 38.64 ERROR
r-devel-linux-x86_64-debian-gcc 9.5 1.52 38.02 39.54 ERROR
r-devel-linux-x86_64-fedora-clang 9.5 76.75 ERROR
r-devel-linux-x86_64-fedora-gcc 9.5 74.11 ERROR
r-devel-osx-x86_64-clang 9.5 72.08 ERROR
r-devel-windows-ix86+x86_64 9.5 5.00 61.00 66.00 ERROR
r-patched-linux-x86_64 9.5 1.54 37.46 38.99 NOTE
r-patched-solaris-sparc 9.5 468.10 NOTE
r-patched-solaris-x86 9.5 89.70 NOTE
r-release-linux-x86_64 9.5 1.54 38.58 40.12 NOTE
r-release-osx-x86_64-mavericks 9.5 NOTE
r-release-windows-ix86+x86_64 9.5 8.00 61.00 69.00 NOTE
r-oldrel-windows-ix86+x86_64 9.5 11.00 73.00 84.00 NOTE

Check Details

Version: 9.5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 9.5
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘RColorBrewer’ ‘gdata’ ‘grid’ ‘methods’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 9.5
Check: R code for possible problems
Result: NOTE
    .matricize: no visible global function definition for ‘terms’
    .matricize: no visible global function definition for ‘model.frame’
    .rr.score.asymp: no visible global function definition for ‘qnorm’
    .twoby: no visible global function definition for ‘terms’
    .twoby: no visible global function definition for ‘model.frame’
    IDRlsi: no visible global function definition for ‘qchisq’
    IDRlsi: no visible global function definition for ‘pchisq’
    IDRsc: no visible global function definition for ‘qnorm’
    RRlsi: no visible global function definition for ‘qchisq’
    RRlsi: no visible global function definition for ‘pchisq’
    RRmh: no visible global function definition for ‘qnorm’
    RRmpWald: no visible global function definition for ‘qt’
    RRmpWald: no visible global function definition for ‘qnorm’
    RRor: no visible global function definition for ‘coef’
    RRor: no visible global function definition for ‘qnorm’
    RRor: no visible global function definition for ‘qt’
    RRotsst : binci: no visible global function definition for ‘qbeta’
    RRsc: no visible global function definition for ‘qnorm’
    RRstr: no visible global function definition for ‘qnorm’
    RRstr: no visible global function definition for ‘pchisq’
    RRtosst : binci: no visible global function definition for ‘qbeta’
    pf: no visible global function definition for ‘new’
    phiWt: no visible global function definition for ‘update’
    phiWt: no visible global function definition for ‘glm’
    rr1: no visible global function definition for ‘new’
    rrmp: no visible global function definition for ‘new’
    rror: no visible global function definition for ‘new’
    rrsc: no visible global function definition for ‘new’
    rrsi: no visible global function definition for ‘new’
    rrstr: no visible global function definition for ‘new’
    rsbWt: no visible global function definition for ‘update’
    tauWt : Tau: no visible global function definition for ‘resid’
    tauWt : tauOptim: no visible global function definition for ‘resid’
    tauWt : tauOptim: no visible global function definition for ‘update’
    tauWt: no visible global function definition for ‘update’
    tauWt: no visible global function definition for ‘glm’
    tauWt: no visible global function definition for ‘binomial’
    Undefined global functions or variables:
     binomial coef glm model.frame new pchisq qbeta qchisq qnorm qt resid
     terms update
    Consider adding
     importFrom("methods", "new")
     importFrom("stats", "binomial", "coef", "glm", "model.frame", "pchisq",
     "qbeta", "qchisq", "qnorm", "qt", "resid", "terms",
     "update")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 9.5
Check: examples
Result: ERROR
    Running examples in ‘PF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RRmpWald
    > ### Title: Wald confidence intervals for RR from matched pairs
    > ### Aliases: RRmpWald
    >
    > ### ** Examples
    >
    > RRmpWald(pos ~ tx + cluster(cage), New, compare = c('con', 'vac'))
    Error in `[.data.frame`(tbl, , compare[2]) : undefined columns selected
    Calls: RRmpWald -> .twoby -> table -> [ -> [.data.frame
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64