CRAN Package Check Results for Package PHYLOGR

Last updated on 2017-12-11 02:48:50 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.8 1.10 20.68 21.78 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.8 0.98 18.00 18.98 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.8 27.08 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.8 25.92 NOTE
r-devel-windows-ix86+x86_64 1.0.8 7.00 43.00 50.00 NOTE
r-patched-linux-x86_64 1.0.8 1.06 22.56 23.62 NOTE
r-patched-solaris-x86 1.0.8 38.50 NOTE
r-release-linux-x86_64 1.0.8 1.02 22.66 23.68 NOTE
r-release-windows-ix86+x86_64 1.0.8 4.00 32.00 36.00 NOTE
r-release-osx-x86_64 1.0.8 NOTE
r-oldrel-windows-ix86+x86_64 1.0.8 3.00 31.00 34.00 NOTE
r-oldrel-osx-x86_64 1.0.8 NOTE

Check Details

Version: 1.0.8
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.phylog.cancor plot.phylog.lm plot.phylog.prcomp prcomp.phylog
     print.summary.phylog.cancor print.summary.phylog.lm
     print.summary.phylog.prcomp summary.phylog.cancor summary.phylog.lm
     summary.phylog.prcomp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0.8
Check: R code for possible problems
Result: NOTE
    cancor.phylog : <anonymous>: no visible global function definition for
     ‘cancor’
    cor.origin: no visible global function definition for ‘lm’
    lm.phylog : my.drop : deviance.lm: no visible global function
     definition for ‘weighted.residuals’
    lm.phylog : my.drop: no visible global function definition for
     ‘model.matrix’
    lm.phylog : my.drop: no visible global function definition for
     ‘drop.scope’
    lm.phylog : my.drop: no visible global function definition for
     ‘predict’
    lm.phylog : my.drop: no visible global function definition for
     ‘lm.wfit’
    lm.phylog : my.drop: no visible global function definition for ‘lm.fit’
    lm.phylog: no visible global function definition for ‘drop.scope’
    lm.phylog: no visible global function definition for ‘lm’
    lm.phylog : <anonymous>: no visible global function definition for ‘lm’
    phylog.gls.fit: no visible global function definition for ‘lm’
    plot.phylog.cancor: no visible global function definition for ‘par’
    plot.phylog.cancor: no visible global function definition for ‘hist’
    plot.phylog.cancor: no visible global function definition for ‘abline’
    plot.phylog.lm: no visible global function definition for ‘par’
    plot.phylog.lm: no visible global function definition for ‘hist’
    plot.phylog.lm: no visible global function definition for ‘abline’
    plot.phylog.prcomp: no visible global function definition for ‘par’
    plot.phylog.prcomp: no visible global function definition for ‘plot’
    plot.phylog.prcomp: no visible global function definition for ‘lines’
    plot.phylog.prcomp: no visible global function definition for ‘legend’
    plot.phylog.prcomp: no visible global function definition for ‘hist’
    plot.phylog.prcomp: no visible global function definition for ‘abline’
    prcomp.phylog : <anonymous>: no visible global function definition for
     ‘prcomp’
    read.phylog.matrix: no visible global function definition for
     ‘read.table’
    summary.phylog.cancor: no visible binding for global variable
     ‘quantile’
    summary.phylog.lm: no visible binding for global variable ‘quantile’
    summary.phylog.prcomp: no visible binding for global variable
     ‘quantile’
    Undefined global functions or variables:
     abline cancor drop.scope hist legend lines lm lm.fit lm.wfit
     model.matrix par plot prcomp predict quantile read.table
     weighted.residuals
    Consider adding
     importFrom("graphics", "abline", "hist", "legend", "lines", "par",
     "plot")
     importFrom("stats", "cancor", "drop.scope", "lm", "lm.fit", "lm.wfit",
     "model.matrix", "prcomp", "predict", "quantile",
     "weighted.residuals")
     importFrom("utils", "read.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64