CRAN Package Check Results for Package PKtools

Last updated on 2014-04-24 17:49:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5-0 1.13 27.80 28.92 NOTE
r-devel-linux-x86_64-debian-gcc 1.5-0 1.11 28.61 29.72 NOTE
r-devel-linux-x86_64-fedora-clang 1.5-0 65.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5-0 61.66 NOTE
r-devel-osx-x86_64-clang 1.5-0 51.39 NOTE
r-devel-osx-x86_64-gcc 1.5-0 NOTE
r-devel-windows-ix86+x86_64 1.5-0 4.00 43.00 47.00 NOTE
r-patched-linux-x86_64 1.5-0 1.20 27.71 28.91 NOTE
r-patched-solaris-sparc 1.5-0 310.80 NOTE
r-patched-solaris-x86 1.5-0 75.00 NOTE
r-release-linux-ix86 1.5-0 2.00 50.00 52.00 NOTE
r-release-linux-x86_64 1.5-0 1.14 27.92 29.06 NOTE
r-release-osx-x86_64-mavericks 1.5-0 WARN
r-release-osx-x86_64-snowleopard 1.5-0 NOTE
r-release-windows-ix86+x86_64 1.5-0 4.00 44.00 48.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5-0 4.00 46.00 50.00 NOTE

Check Details

Version: 1.5-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘R2HTML’ ‘lattice’ ‘xtable’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘R2HTML’ ‘lattice’ ‘methods’ ‘nlme’ ‘xtable’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5-0
Check: R code for possible problems
Result: NOTE
    AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
     of 'nr' to 'nrow'
    AICcomp: warning in matrix(NA, nr = n1, nc = 7): partial argument match
     of 'nc' to 'ncol'
    HTMLtools.NONMEM: warning in HTMLInitFile(outdir = nameDir, file =
     nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
     partial argument match of 'file' to 'filename'
    HTMLtools.PKNLME: warning in HTMLInitFile(outdir = nameDir, file =
     nameFile$file, extension = "html", BackGroundColor = "#E9967A"):
     partial argument match of 'file' to 'filename'
    HTMLtools.WinBUGS: warning in HTMLInitFile(outdir = nameDir, file =
     nameFile & file, extension = "html", BackGroundColor = "#E9967A"):
     partial argument match of 'file' to 'filename'
    RunNM: warning in pk(pkvar = data$pkvar, cov = data$cov, covnames =
     nameData$covnames): partial argument match of 'cov' to 'covdata'
    coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
     match of 'nr' to 'nrow'
    coVar.id: warning in matrix(NA, nr = nid, nc = ncov): partial argument
     match of 'nc' to 'ncol'
    pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
     of 'nr' to 'nrow'
    pk: warning in matrix(NA, nr = nid, nc = ncov): partial argument match
     of 'nc' to 'ncol'
    bugs.plot: no visible binding for global variable ‘n.sims’
    bugs.run: no visible binding for '<<-' assignment to ‘options.save’
    bugs.run: no visible binding for global variable ‘options.save’
    bugs.run.error: no visible binding for global variable ‘options.save’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5-0
Check: Rd line widths
Result: NOTE
    Rd file 'indEst.Rd':
     \examples lines wider than 100 characters:
     if (out==0) print(try(indEst(PKNLMEobject=results.nlme5, NMobject=results5, WBobject=WB2, outputType="R")))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5-0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    6db304b2/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.5-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'R2HTML' 'lattice' 'xtable'
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard