CRAN Package Check Results for Package PSCBS

Last updated on 2015-06-30 12:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.44.0 9.01 200.54 209.55 NOTE
r-devel-linux-x86_64-debian-gcc 0.44.0 9.14 192.74 201.88 NOTE
r-devel-linux-x86_64-fedora-clang 0.44.0 377.65 OK
r-devel-linux-x86_64-fedora-gcc 0.44.0 359.25 OK
r-devel-osx-x86_64-clang 0.44.0 358.52 OK
r-devel-windows-ix86+x86_64 0.44.0 29.00 292.00 321.00 NOTE
r-patched-linux-x86_64 0.44.0 8.50 191.00 199.50 OK
r-patched-solaris-sparc 0.44.0 2204.00 OK --no-build-vignettes
r-patched-solaris-x86 0.44.0 609.20 OK
r-release-linux-x86_64 0.44.0 9.10 191.48 200.58 OK
r-release-osx-x86_64-mavericks 0.44.0 OK
r-release-windows-ix86+x86_64 0.44.0 27.00 296.00 323.00 OK
r-oldrel-windows-ix86+x86_64 0.44.0 32.00 318.00 350.00 OK

Check Details

Version: 0.44.0
Check: R code for possible problems
Result: NOTE
    .addC1C2WithStatitics : meanFcn: no visible global function definition
     for ‘median’
    .addC1C2WithStatitics : sdFcn: no visible global function definition
     for ‘mad’
    .addC1C2WithStatitics : sdFcn: no visible global function definition
     for ‘sd’
    .addC1C2WithStatitics: no visible global function definition for ‘cor’
    .addCACBWithStatitics : meanFcn: no visible global function definition
     for ‘median’
    .addCACBWithStatitics : sdFcn: no visible global function definition
     for ‘mad’
    .addCACBWithStatitics : sdFcn: no visible global function definition
     for ‘sd’
    .addCACBWithStatitics: no visible global function definition for ‘cor’
    arrowsC1C2.PairedPSCBS: no visible global function definition for
     ‘arrows’
    arrowsDeltaC1C2.PairedPSCBS: no visible global function definition for
     ‘arrows’
    as.character.CBS: no visible global function definition for ‘quantile’
    bootstrapDHByRegion.PairedPSCBS : <anonymous>: no visible global
     function definition for ‘quantile’
    bootstrapTCNandDHByRegion.PairedPSCBS : statsFcn: no visible global
     function definition for ‘quantile’
    callGainsAndLosses.CBS: no visible global function definition for
     ‘median’
    callOutliers.CBS: no visible global function definition for ‘mad’
    drawCentromeres.CBS: no visible global function definition for ‘abline’
    drawChangePoints.PSCBS: no visible global function definition for
     ‘abline’
    drawChangePoints.PSCBS: no visible global function definition for
     ‘mtext’
    drawChangePointsC1C2.PairedPSCBS: no visible global function definition
     for ‘lines’
    drawChangePointsC1C2.PairedPSCBS: no visible global function definition
     for ‘text’
    drawChromosomes.CBS: no visible global function definition for ‘mtext’
    drawChromosomes.CBS: no visible global function definition for ‘par’
    drawChromosomes.CBS: no visible global function definition for ‘abline’
    drawConfidenceBands.PairedPSCBS: no visible global function definition
     for ‘col2rgb’
    drawConfidenceBands.PairedPSCBS: no visible global function definition
     for ‘rgb’
    drawConfidenceBands.PairedPSCBS: no visible global function definition
     for ‘rect’
    drawKnownSegments.AbstractCBS: no visible global function definition
     for ‘abline’
    drawLevels.DNAcopy : <anonymous>: no visible global function definition
     for ‘lines’
    estimateDeltaABBySmallDH.PairedPSCBS: no visible global function
     definition for ‘quantile’
    estimateDeltaCN.CBS: no visible global function definition for
     ‘density’
    estimateDeltaCN.CBS: no visible global function definition for
     ‘weighted.mean’
    estimateDeltaCN.CBS: no visible global function definition for ‘median’
    estimateHighDHQuantileAtAB.PairedPSCBS: no visible global function
     definition for ‘median’
    estimateKappaByC1Density.PairedPSCBS: no visible global function
     definition for ‘density’
    estimateKappaByC1Density.PairedPSCBS: no visible binding for global
     variable ‘density’
    estimateMeanForDH.PairedPSCBS: no visible global function definition
     for ‘median’
    estimateMeanForDH.PairedPSCBS: no visible global function definition
     for ‘quantile’
    estimateStdDevForHeterozygousBAF.PairedPSCBS: no visible global
     function definition for ‘mad’
    getCallStatistics.CBS: no visible binding for global variable ‘start’
    getCallStatistics.CBS: no visible binding for global variable ‘end’
    highlightArmCalls.CBS: no visible global function definition for ‘par’
    highlightArmCalls.CBS: no visible global function definition for
     ‘abline’
    highlightArmCalls.CBS: no visible global function definition for
     ‘lines’
    highlightArmCalls.CBS: no visible global function definition for ‘rect’
    highlightCalls.CBS: no visible global function definition for ‘abline’
    highlightCalls.CBS: no visible global function definition for ‘points’
    highlightCalls.CBS: no visible global function definition for ‘lines’
    highlightLocusCalls.CBS: no visible global function definition for
     ‘points’
    linesDeltaC1C2.PairedPSCBS: no visible global function definition for
     ‘lines’
    plotC1C2.PairedPSCBS: no visible global function definition for ‘plot’
    plotC1C2.PairedPSCBS: no visible global function definition for
     ‘abline’
    plotDeltaC1C2.PairedPSCBS: no visible global function definition for
     ‘plot’
    plotDeltaC1C2.PairedPSCBS: no visible global function definition for
     ‘abline’
    plotTracks.CBS: no visible global function definition for ‘par’
    plotTracks.CBS: no visible global function definition for ‘plot’
    plotTracks.CBS: no visible global function definition for ‘abline’
    plotTracks1.PairedPSCBS: no visible global function definition for
     ‘par’
    plotTracks1.PairedPSCBS: no visible global function definition for
     ‘points’
    plotTracks1.PairedPSCBS: no visible global function definition for
     ‘plot’
    plotTracks1.PairedPSCBS: no visible global function definition for
     ‘abline’
    plotTracks1.PairedPSCBS: no visible global function definition for
     ‘mtext’
    plotTracks2.PairedPSCBS: no visible global function definition for
     ‘par’
    plotTracks2.PairedPSCBS: no visible global function definition for
     ‘plot’
    plotTracks2.PairedPSCBS: no visible global function definition for
     ‘abline’
    plotTracks2.PairedPSCBS: no visible global function definition for
     ‘points’
    plotTracks2.PairedPSCBS: no visible global function definition for
     ‘mtext’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘par’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘plot’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘points’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘mtext’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘abline’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘axis’
    plotTracksManyChromosomes.CBS: no visible global function definition
     for ‘box’
    plotTracksManyChromosomes.PairedPSCBS : drawXLabelTicks: no visible
     global function definition for ‘mtext’
    plotTracksManyChromosomes.PairedPSCBS : drawXLabelTicks: no visible
     global function definition for ‘axis’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘par’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘plot’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘points’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘abline’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘mtext’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘axis’
    plotTracksManyChromosomes.PairedPSCBS: no visible global function
     definition for ‘box’
    pointsC1C2.PairedPSCBS: no visible global function definition for
     ‘points’
    pointsDeltaC1C2.PairedPSCBS: no visible global function definition for
     ‘points’
    pruneByHClust.AbstractCBS: no visible global function definition for
     ‘cutree’
    segmentByCBS.default: no visible global function definition for
     ‘packageDescription’
    segmentByNonPairedPSCBS.default: no visible global function definition
     for ‘quantile’
    updateMeans.CBS: no visible binding for global variable ‘weighted.mean’
    weightedQuantile.default: no visible global function definition for
     ‘quantile’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64