CRAN Package Check Results for Package PamGeneMixed

Last updated on 2014-09-02 08:47:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.03 4.78 55.24 60.02 NOTE
r-devel-linux-x86_64-debian-gcc 1.03 4.72 56.35 61.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.03 161.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.03 144.94 NOTE
r-devel-osx-x86_64-clang 1.03 119.98 NOTE
r-devel-windows-ix86+x86_64 1.03 13.00 83.00 96.00 NOTE
r-patched-linux-x86_64 1.03 4.84 56.34 61.18 NOTE
r-patched-solaris-sparc 1.03 803.80 NOTE
r-patched-solaris-x86 1.03 192.50 NOTE
r-release-linux-ix86 1.03 5.96 68.93 74.89 NOTE
r-release-linux-x86_64 1.03 5.43 57.20 62.63 NOTE
r-release-osx-x86_64-mavericks 1.03 NOTE
r-release-osx-x86_64-snowleopard 1.03 NOTE
r-release-windows-ix86+x86_64 1.03 13.00 88.00 101.00 NOTE
r-oldrel-windows-ix86+x86_64 1.03 16.00 131.00 147.00 NOTE

Check Details

Version: 1.03
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘mgcv’ ‘nlme’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘gplots’ ‘mgcv’ ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.03
Check: R code for possible problems
Result: NOTE
    AutoPamGeneMix: no visible global function definition for ‘varIdent’
    PamGeneMix: no visible global function definition for ‘varIdent’
    PamGeneMix: no visible global function definition for ‘gamm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.03
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘PamGeneMixed.Rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.03
Check: Rd line widths
Result: NOTE
    Rd file 'AutoPamGeneMix.Rd':
     \examples lines wider than 100 characters:
     # Testing the group specific velocities at t=0,t=end, t=30, and for entire profile.
    
    Rd file 'PamGeneMix.Rd':
     \examples lines wider than 100 characters:
     M3gamm<-PamGeneMix(formula=y~-1+ResTrt+s(time,by=ResTrt,bs="tp",m=3),Weights=varIdent(form=~1|ResTrt) ,
     M4gamm<-PamGeneMix(formula=y~-1+ResState*TreatName+s(time,by=ResTrt,bs="tp",m=3),Weights=varIdent(form=~1|ResState) ,
    
    Rd file 'testVarCom.Rd':
     \examples lines wider than 100 characters:
     M3gamm<-PamGeneMix(formula=y~-1+ResTrt+s(time,by=ResTrt,bs="tp",m=3),Weights=varIdent(form=~1|ResTrt) ,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.03
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'PamGeneMixed.Rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64