CRAN Package Check Results for Package PhViD

Last updated on 2016-07-24 21:50:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.6 4.00 48.56 52.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.6 3.80 57.17 60.97 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.6 84.83 NOTE
r-devel-osx-x86_64-clang 1.0.6 69.82 NOTE
r-devel-windows-ix86+x86_64 1.0.6 9.00 75.00 84.00 NOTE
r-patched-linux-x86_64 1.0.6 3.65 55.20 58.84 NOTE
r-patched-solaris-sparc 1.0.6 514.30 NOTE
r-patched-solaris-x86 1.0.6 115.70 NOTE
r-release-linux-x86_64 1.0.6 3.95 54.32 58.26 NOTE
r-release-osx-x86_64-mavericks 1.0.6 WARN
r-release-windows-ix86+x86_64 1.0.6 10.00 95.00 105.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.6 12.00 78.00 90.00 NOTE

Check Details

Version: 1.0.6
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘PhViD-Ex.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘LBE’ ‘MCMCpack’
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    BCPNN: no visible global function definition for ‘pnorm’
    BCPNN: no visible global function definition for ‘qnorm’
    GPS : f: no visible global function definition for ‘dnbinom’
    GPS: no visible global function definition for ‘xtabs’
    GPS: no visible global function definition for ‘nlm’
    GPS : lik: no visible global function definition for ‘dnbinom’
    GPS : lik: no visible global function definition for ‘pnbinom’
    GPS: no visible global function definition for ‘dnbinom’
    GPS: no visible global function definition for ‘pgamma’
    GPS : FCoutQuantileDuMouchel: no visible global function definition for
     ‘pgamma’
    PRR: no visible global function definition for ‘pnorm’
    PRR: no visible global function definition for ‘qnorm’
    RFET: no visible global function definition for ‘fisher.test’
    ROR: no visible global function definition for ‘pnorm’
    ROR: no visible global function definition for ‘qnorm’
    as.PhViD: no visible global function definition for ‘xtabs’
    Undefined global functions or variables:
     dnbinom fisher.test nlm pgamma pnbinom pnorm qnorm xtabs
    Consider adding
     importFrom("stats", "dnbinom", "fisher.test", "nlm", "pgamma",
     "pnbinom", "pnorm", "qnorm", "xtabs")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.0.6
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key'library' or 'require' calls to packages already attached by Depends:
     ‘LBE’ ‘MCMCpack’
     Please remove these calls from your code.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 keyBCPNN: no visible global function definition for ‘pnorm’
    BCPNN: no visible global function definition for ‘qnorm’
    GPS : f: no visible global function definition for ‘dnbinom’
    GPS: no visible global function definition for ‘xtabs’
    GPS: no visible global function definition for ‘nlm’
    GPS : lik: no visible global function definition for ‘dnbinom’
    GPS : lik: no visible global function definition for ‘pnbinom’
    GPS: no visible global function definition for ‘dnbinom’
    GPS: no visible global function definition for ‘pgamma’
    GPS : FCoutQuantileDuMouchel: no visible global function definition for
     ‘pgamma’
    PRR: no visible global function definition for ‘pnorm’
    PRR: no visible global function definition for ‘qnorm’
    RFET: no visible global function definition for ‘fisher.test’
    ROR: no visible global function definition for ‘pnorm’
    ROR: no visible global function definition for ‘qnorm’
    as.PhViD: no visible global function definition for ‘xtabs’
    Undefined global functions or variables:
     dnbinom fisher.test nlm pgamma pnbinom pnorm qnorm xtabs
    Consider adding
     importFrom("stats", "dnbinom", "fisher.test", "nlm", "pgamma",
     "pnbinom", "pnorm", "qnorm", "xtabs")
    to your NAMESPACE file.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks