CRAN Package Check Results for Package PopGenome

Last updated on 2015-07-06 10:47:13.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.6 9.71 69.25 78.96 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.6 11.57 69.01 80.58 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.6 151.21 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.6 138.50 NOTE
r-devel-osx-x86_64-clang 2.1.6 134.72 OK
r-devel-windows-ix86+x86_64 2.1.6 133.00 119.00 252.00 NOTE
r-patched-linux-x86_64 2.1.6 11.44 69.53 80.97 OK
r-patched-solaris-sparc 2.1.6 847.60 OK
r-patched-solaris-x86 2.1.6 163.80 OK
r-release-linux-x86_64 2.1.6 11.53 72.75 84.28 OK
r-release-osx-x86_64-mavericks 2.1.6 OK
r-release-windows-ix86+x86_64 2.1.6 129.00 120.00 249.00 OK
r-oldrel-windows-ix86+x86_64 2.1.6 146.00 175.00 321.00 NOTE

Check Details

Version: 2.1.6
Check: R code for possible problems
Result: NOTE
    BayeScanR: no visible global function definition for ‘rnorm’
    MK: no visible global function definition for ‘combn’
    MS: no visible global function definition for ‘var’
    MS: no visible binding for global variable ‘var’
    PopGplot: no visible global function definition for ‘rainbow’
    PopGplot: no visible global function definition for ‘loess’
    PopGplot: no visible global function definition for ‘plot’
    PopGplot: no visible global function definition for ‘predict’
    PopGplot: no visible global function definition for ‘lines’
    Whop_readVCF: no visible global function definition for ‘read.table’
    calc_average_nuc_diversity_between_per_site: no visible global function
     definition for ‘combn’
    calc_diversities: no visible global function definition for ‘combn’
    calc_hwhafsth: no visible global function definition for ‘combn’
    calc_hwhafsth_FAST: no visible global function definition for ‘combn’
    calc_pi: no visible global function definition for ‘combn’
    calc_quantile: no visible global function definition for ‘quantile’
    coalsim: no visible global function definition for ‘var’
    coalsim: no visible binding for global variable ‘var’
    fstcalc: no visible global function definition for ‘combn’
    get.feature.names: no visible global function definition for
     ‘read.table’
    get_gff_info: no visible global function definition for ‘read.table’
    get_ref_alleles: no visible global function definition for ‘read.table’
    gffRead: no visible global function definition for ‘read.table’
    gtest: no visible global function definition for ‘pchisq’
    hudsonkaplan85rm: no visible global function definition for ‘combn’
    intern.calc.R2 : <anonymous>: no visible global function definition for
     ‘fisher.test’
    jump_model_codominant: no visible global function definition for
     ‘rnorm’
    jump_model_codominant: no visible global function definition for
     ‘runif’
    linkdisequ: no visible global function definition for ‘combn’
    mismatch: no visible global function definition for ‘combn’
    my_rdirichlet: no visible global function definition for ‘rgamma’
    pair_linkdisequ_FAST : <anonymous>: no visible global function
     definition for ‘fisher.test’
    permute: no visible global function definition for ‘combn’
    plot_avg_cs: no visible global function definition for ‘plot’
    plot_avg_cs: no visible global function definition for ‘density’
    plot_avg_cs: no visible global function definition for ‘abline’
    readData: no visible global function definition for ‘combn’
    readSNP: no visible global function definition for ‘read.table’
    readVCF: no visible global function definition for ‘read.table’
    readVCFchunk: no visible global function definition for ‘read.table’
    readVCFchunkHap: no visible global function definition for ‘read.table’
    readVCFchunk_tet: no visible global function definition for
     ‘read.table’
    readVCFchunk_tri: no visible global function definition for
     ‘read.table’
    set_gff_info: no visible global function definition for ‘read.table’
    snn: no visible global function definition for ‘combn’
    split_data_into_GFF_attributes: no visible global function definition
     for ‘read.table’
    update_d_alphaco_i: no visible global function definition for ‘rnorm’
    update_d_alphaco_i: no visible global function definition for ‘runif’
    update_d_betaco: no visible global function definition for ‘rnorm’
    update_d_betaco: no visible global function definition for ‘runif’
    update_freq_codominant: no visible global function definition for
     ‘runif’
    F_ST.stats.2,GENOME: no visible global function definition for ‘combn’
    F_ST.stats,GENOME: no visible global function definition for ‘combn’
    MKT,GENOME: no visible global function definition for ‘combn’
    MKT,GENOME : <anonymous>: no visible global function definition for
     ‘fisher.test’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘colors’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘plot’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘axis’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘abline’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘points’
    SNPFST,GENOME: no visible global function definition for ‘combn’
    diversity.stats,GENOME: no visible global function definition for
     ‘combn’
    mult.linkage.stats,GENOME: no visible global function definition for
     ‘combn’
    popFSTN,GENOME: no visible global function definition for ‘combn’
    Undefined global functions or variables:
     abline axis colors combn density fisher.test lines loess pchisq plot
     points predict quantile rainbow read.table rgamma rnorm runif var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.1.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
Flavor: r-oldrel-windows-ix86+x86_64