CRAN Package Check Results for Package PopGenome

Last updated on 2015-09-01 23:48:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.6 9.71 71.69 81.40 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.6 11.66 68.88 80.54 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.6 149.27 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.6 135.91 NOTE
r-devel-osx-x86_64-clang 2.1.6 129.52 OK
r-devel-windows-ix86+x86_64 2.1.6 128.00 152.00 280.00 NOTE
r-patched-linux-x86_64 2.1.6 11.78 70.20 81.98 OK
r-patched-solaris-sparc 2.1.6 859.30 OK
r-patched-solaris-x86 2.1.6 177.80 OK
r-release-linux-x86_64 2.1.6 11.58 72.76 84.34 OK
r-release-osx-x86_64-mavericks 2.1.6 OK
r-release-windows-ix86+x86_64 2.1.6 122.00 138.00 260.00 OK
r-oldrel-windows-ix86+x86_64 2.1.6 118.00 128.00 246.00 NOTE

Check Details

Version: 2.1.6
Check: R code for possible problems
Result: NOTE
    BayeScanR: no visible global function definition for ‘rnorm’
    MK: no visible global function definition for ‘combn’
    MS: no visible global function definition for ‘var’
    MS: no visible binding for global variable ‘var’
    PopGplot: no visible global function definition for ‘rainbow’
    PopGplot: no visible global function definition for ‘loess’
    PopGplot: no visible global function definition for ‘plot’
    PopGplot: no visible global function definition for ‘predict’
    PopGplot: no visible global function definition for ‘lines’
    Whop_readVCF: no visible global function definition for ‘read.table’
    calc_average_nuc_diversity_between_per_site: no visible global function
     definition for ‘combn’
    calc_diversities: no visible global function definition for ‘combn’
    calc_hwhafsth: no visible global function definition for ‘combn’
    calc_hwhafsth_FAST: no visible global function definition for ‘combn’
    calc_pi: no visible global function definition for ‘combn’
    calc_quantile: no visible global function definition for ‘quantile’
    coalsim: no visible global function definition for ‘var’
    coalsim: no visible binding for global variable ‘var’
    fstcalc: no visible global function definition for ‘combn’
    get.feature.names: no visible global function definition for
     ‘read.table’
    get_gff_info: no visible global function definition for ‘read.table’
    get_ref_alleles: no visible global function definition for ‘read.table’
    gffRead: no visible global function definition for ‘read.table’
    gtest: no visible global function definition for ‘pchisq’
    hudsonkaplan85rm: no visible global function definition for ‘combn’
    intern.calc.R2 : <anonymous>: no visible global function definition for
     ‘fisher.test’
    jump_model_codominant: no visible global function definition for
     ‘rnorm’
    jump_model_codominant: no visible global function definition for
     ‘runif’
    linkdisequ: no visible global function definition for ‘combn’
    mismatch: no visible global function definition for ‘combn’
    my_rdirichlet: no visible global function definition for ‘rgamma’
    pair_linkdisequ_FAST : <anonymous>: no visible global function
     definition for ‘fisher.test’
    permute: no visible global function definition for ‘combn’
    plot_avg_cs: no visible global function definition for ‘plot’
    plot_avg_cs: no visible global function definition for ‘density’
    plot_avg_cs: no visible global function definition for ‘abline’
    readData: no visible global function definition for ‘combn’
    readSNP: no visible global function definition for ‘read.table’
    readVCF: no visible global function definition for ‘read.table’
    readVCFchunk: no visible global function definition for ‘read.table’
    readVCFchunkHap: no visible global function definition for ‘read.table’
    readVCFchunk_tet: no visible global function definition for
     ‘read.table’
    readVCFchunk_tri: no visible global function definition for
     ‘read.table’
    set_gff_info: no visible global function definition for ‘read.table’
    snn: no visible global function definition for ‘combn’
    split_data_into_GFF_attributes: no visible global function definition
     for ‘read.table’
    update_d_alphaco_i: no visible global function definition for ‘rnorm’
    update_d_alphaco_i: no visible global function definition for ‘runif’
    update_d_betaco: no visible global function definition for ‘rnorm’
    update_d_betaco: no visible global function definition for ‘runif’
    update_freq_codominant: no visible global function definition for
     ‘runif’
    F_ST.stats.2,GENOME: no visible global function definition for ‘combn’
    F_ST.stats,GENOME: no visible global function definition for ‘combn’
    MKT,GENOME: no visible global function definition for ‘combn’
    MKT,GENOME : <anonymous>: no visible global function definition for
     ‘fisher.test’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘colors’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘plot’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘axis’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘abline’
    PG_plot.biallelic.matrix,GENOME: no visible global function definition
     for ‘points’
    SNPFST,GENOME: no visible global function definition for ‘combn’
    diversity.stats,GENOME: no visible global function definition for
     ‘combn’
    mult.linkage.stats,GENOME: no visible global function definition for
     ‘combn’
    popFSTN,GENOME: no visible global function definition for ‘combn’
    Undefined global functions or variables:
     abline axis colors combn density fisher.test lines loess pchisq plot
     points predict quantile rainbow read.table rgamma rnorm runif var
    Consider adding
     importFrom("grDevices", "colors", "rainbow")
     importFrom("graphics", "abline", "axis", "lines", "plot", "points")
     importFrom("stats", "density", "fisher.test", "loess", "pchisq",
     "predict", "quantile", "rgamma", "rnorm", "runif", "var")
     importFrom("utils", "combn", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.1.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
Flavor: r-oldrel-windows-ix86+x86_64