CRAN Package Check Results for Package PresenceAbsence

Last updated on 2014-11-24 12:47:52.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.9 0.88 19.02 19.90 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.9 0.87 19.26 20.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.9 41.84 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.9 38.64 NOTE
r-devel-osx-x86_64-clang 1.1.9 41.21 OK
r-devel-windows-ix86+x86_64 1.1.9 3.00 28.00 31.00 OK
r-patched-linux-x86_64 1.1.9 0.96 19.98 20.95 NOTE
r-patched-solaris-sparc 1.1.9 238.40 OK
r-patched-solaris-x86 1.1.9 50.70 OK
r-release-linux-ix86 1.1.9 1.30 26.57 27.87 OK
r-release-linux-x86_64 1.1.9 0.89 19.67 20.56 NOTE
r-release-osx-x86_64-mavericks 1.1.9 OK
r-release-windows-ix86+x86_64 1.1.9 3.00 30.00 33.00 OK
r-oldrel-windows-ix86+x86_64 1.1.9 3.00 30.00 33.00 OK

Check Details

Version: 1.1.9
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘COPYRIGHTS’
    Copyright information should be in file inst/COPYRIGHTS
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.9
Check: Rd line widths
Result: NOTE
    Rd file 'auc.roc.plot.Rd':
     \usage lines wider than 90 characters:
     auc.roc.plot(DATA, threshold = 101, find.auc = TRUE, which.model = (1:(ncol(DATA) - 2)), na.rm = FALSE, xlab = "1-Specificity (false po ... [TRUNCATED]
    
    Rd file 'calibration.plot.Rd':
     \usage lines wider than 90 characters:
     calibration.plot(DATA, which.model = 1, na.rm = FALSE, alpha = 0.05, N.bins = 5, xlab = "Predicted Probability of Occurrence", ylab = " ... [TRUNCATED]
    
    Rd file 'cmx.Rd':
     \examples lines wider than 100 characters:
     SIMDATA$Predicted[SIMDATA$Observed==1]<-rnorm(n=length(SIMDATA$Observed[SIMDATA$Observed==1]),mean=.8,sd=.15)
     SIMDATA$Predicted[SIMDATA$Observed==0]<-rnorm(n=length(SIMDATA$Observed[SIMDATA$Observed==0]),mean=.2,sd=.15)
     SIMDATA$Predicted<-(SIMDATA$Predicted-min(SIMDATA$Predicted))/(max(SIMDATA$Predicted)-min(SIMDATA$Predicted))
    
    Rd file 'error.threshold.plot.Rd':
     \usage lines wider than 90 characters:
     error.threshold.plot(DATA, threshold = 101, which.model = 1, na.rm = FALSE, xlab = "Threshold", ylab = "Accuracy Measures", main = NULL ... [TRUNCATED]
     \examples lines wider than 100 characters:
     opt.methods=c("Default", "Sens=Spec", "MinROCdist"), vert.lines=TRUE ... [TRUNCATED]
    
    Rd file 'optimal.thresholds.Rd':
     \usage lines wider than 90 characters:
     optimal.thresholds(DATA = NULL, threshold = 101, which.model = 1:(ncol(DATA)-2), model.names = NULL, na.rm = FALSE, opt.methods = NULL, ... [TRUNCATED]
    
    Rd file 'presence.absence.accuracy.Rd':
     \usage lines wider than 90 characters:
     presence.absence.accuracy(DATA, threshold = 0.5, find.auc = TRUE, st.dev = TRUE, which.model = (1:(ncol(DATA) - 2)), na.rm = FALSE)
    
    Rd file 'presence.absence.hist.Rd':
     \usage lines wider than 90 characters:
     presence.absence.hist(DATA, which.model = 1, na.rm = FALSE, xlab = "predicted probability", ylab = "number of plots", main = NULL, mode ... [TRUNCATED]
    
    Rd file 'presence.absence.simulation.Rd':
     \usage lines wider than 90 characters:
     presence.absence.simulation(n, prevalence, N.models = 1, shape1.absent, shape2.absent, shape1.present, shape2.present)
    
    Rd file 'presence.absence.summary.Rd':
     \usage lines wider than 90 characters:
     presence.absence.summary(DATA, threshold = 101, find.auc = TRUE, which.model = 1, na.rm = FALSE, main = NULL, model.names = NULL, alpha ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64