CRAN Package Check Results for Package REBayes

Last updated on 2015-03-28 19:50:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.50 7.68 7.68 NOTE --install=no
r-devel-linux-x86_64-debian-gcc 0.50 7.68 7.68 NOTE --install=no
r-devel-linux-x86_64-fedora-clang 0.50 79.21 NOTE
r-devel-linux-x86_64-fedora-gcc 0.50 73.58 ERROR
r-prerel-linux-x86_64 0.50 7.62 7.62 NOTE --install=no
r-release-linux-x86_64 0.50 8.25 8.25 OK --install=no
r-release-osx-x86_64-mavericks 0.50 ERROR
r-release-osx-x86_64-snowleopard 0.50 ERROR
r-oldrel-windows-ix86+x86_64 0.32 0.00 1.00 1.00 ERROR

Check Details

Version: 0.50
Flags: --install=no
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.medde predict.GLmix
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-prerel-linux-x86_64

Version: 0.50
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.medde predict.GLmix
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.50
Check: examples
Result: ERROR
    Running examples in ‘REBayes-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: medde
    > ### Title: Maximum Entropy [De]Regularized Density Estimation
    > ### Aliases: medde qmedde rmedde mesh1 plot.medde
    > ### Keywords: nonparametric
    >
    > ### ** Examples
    >
    > #Maximum Likelihood Estimation of a Log-Concave Density
    > set.seed(1968)
    > x <- rgamma(50,10)
    > m <- medde(x, v = 50, lambda = -.5, verb = 5)
    Acquiring MOSEK environment
    Computer - Platform : Linux/64-X86
    Computer - CPU type : Intel-P4
    MOSEK - task name :
    MOSEK - objective sense : min
    MOSEK - problem type : GECO (general convex optimization problem)
    MOSEK - constraints : 50 variables : 98
    MOSEK - integer variables : 0
    Optimizer started.
    Interior-point optimizer started.
    Presolve started.
    Linear dependency checker started.
    Linear dependency checker terminated.
    Eliminator started.
    Total number of eliminations : 7
    Eliminator terminated.
    Eliminator - tries : 1 time : 0.00
    Eliminator - elim's : 7
    Lin. dep. - tries : 1 time : 0.00
    Lin. dep. - number : 0
    Presolve terminated. Time: 0.01
    Matrix reordering started.
    Local matrix reordering started.
    Local matrix reordering terminated.
    Matrix reordering terminated.
    Optimizer - threads : 1
    Optimizer - solved problem : the primal
    Optimizer - constraints : 41 variables : 89
    Factor - setup time : 0.01 order time : 0.00
    Factor - GP order used : no GP order time : 0.00
    Factor - nonzeros before factor : 120 after factor : 139
    Factor - offending columns : 0 flops : 1.50e+03
    ITE PFEAS DFEAS KAP/TAU POBJ DOBJ MU TIME
    0 4.9e+01 8.3e+00 1.0e+00 0.000000000e+00 -1.291559625e+01 1.0e+00 0.03
    1 1.1e+01 2.3e+00 1.1e+00 -2.821073496e+00 -1.167380419e+01 2.3e-01 0.04
    2 1.1e+00 1.2e+00 3.2e-01 -2.795510436e+00 -6.189195825e+00 4.1e-02 0.04
    3 1.4e-01 3.3e-01 6.0e-02 -2.339654079e+00 -2.668573730e+00 6.5e-03 0.04
    4 1.8e-02 1.2e-01 2.3e-03 -2.391275202e+00 -2.462618827e+00 1.5e-03 0.04
    5 4.4e-03 4.3e-02 3.8e-04 -2.399393047e+00 -2.419575040e+00 4.3e-04 0.04
    6 6.9e-04 1.0e-02 7.8e-05 -2.402536899e+00 -2.406473249e+00 8.6e-05 0.04
    7 1.5e-04 2.4e-03 2.0e-05 -2.402507561e+00 -2.403458357e+00 2.1e-05 0.04
    8 9.7e-06 1.9e-04 1.4e-06 -2.402642965e+00 -2.402711648e+00 1.5e-06 0.04
    9 6.0e-07 1.7e-05 1.1e-07 -2.402645959e+00 -2.402651627e+00 1.3e-07 0.04
    10 6.0e-09 1.4e-06 4.0e-09 -2.402646520e+00 -2.402646776e+00 6.0e-09 0.04
    11 5.1e-11 1.7e-07 4.3e-10 -2.402646617e+00 -2.402646645e+00 6.8e-10 0.04
    12 3.3e-12 1.1e-08 3.0e-11 -2.402646633e+00 -2.402646635e+00 4.2e-11 0.04
    Interior-point optimizer terminated. Time: 0.04.
    
    Optimizer terminated. Time: 0.07
    
    Solution summary
     Interior-point solution
     Problem status : PRIMAL_AND_DUAL_FEASIBLE
     Solution status : OPTIMAL
     Primal - objective: -2.4026466334e+00 eq. inf.: 2.00e-12 max bound inf.: 6.94e-18 cone inf.: 0.00e+00
     Dual - objective: -2.4026466352e+00 eq. inf.: 7.82e-09 max bound inf.: 0.00e+00 cone inf.: 0.00e+00
    
    Optimizer summary
     Optimizer - time: 0.07
     Interior-point - iterations : 12 time: 0.04
     Basis identification - time: 0.00
     Primal - iterations : 0 time: 0.00
     Dual - iterations : 0 time: 0.00
     Clean primal - iterations : 0 time: 0.00
     Clean dual - iterations : 0 time: 0.00
     Clean primal-dual - iterations : 0 time: 0.00
     Simplex - time: 0.00
     Primal simplex - iterations : 0 time: 0.00
     Dual simplex - iterations : 0 time: 0.00
     Primal-dual simplex - iterations : 0 time: 0.00
     Mixed integer - relaxations: 0 time: 0.00
    
    > plot(m)
    > lines(m$x,dgamma(m$x,10),col = 2)
    > points(x,m$g,cex = 0.5)
    > rug(x)
    > title(paste("log likelihood = ", round(m$logLik,2)))
    > legend(14,.12,c("ghat","true"),lty = 1, col = 1:2)
    >
    > #Maximum Likelihood Estimation of a Gamma Density with TV constraint
    > set.seed(1968)
    > x <- rgamma(50,5)
    > f <- medde(x, v = 50, lambda = 0.005, verb = 5)
    An error occurred while setting up the problem.
    ERROR: No support for multiple tasks yet!
    Error in if (status != "OPTIMAL") warning(paste("Solution status = ", :
     argument is of length zero
    Calls: medde
    Execution halted
    Releasing MOSEK environment
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.50
Check: package dependencies
Result: ERROR
    Package required but not available: ‘Rmosek’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.32
Check: package dependencies
Result: ERROR
    Package required but not available: 'Rmosek'
    
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64