CRAN Package Check Results for Package RFLPtools

Last updated on 2014-04-23 12:48:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 0.91 26.02 26.94 NOTE
r-devel-linux-x86_64-debian-gcc 1.5 0.92 26.08 27.00 NOTE
r-devel-linux-x86_64-fedora-clang 1.5 57.75 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5 53.79 NOTE
r-devel-osx-x86_64-clang 1.5 49.94 NOTE
r-devel-osx-x86_64-gcc 1.5 ERROR
r-devel-windows-ix86+x86_64 1.5 3.00 44.00 47.00 NOTE
r-patched-linux-x86_64 1.5 1.03 25.82 26.86 NOTE
r-patched-solaris-sparc 1.5 295.50 NOTE
r-patched-solaris-x86 1.5 69.30 NOTE
r-release-linux-ix86 1.5 2.00 46.00 48.00 NOTE
r-release-linux-x86_64 1.5 0.91 26.70 27.61 NOTE
r-release-osx-x86_64-mavericks 1.5 WARN
r-release-osx-x86_64-snowleopard 1.5 NOTE
r-release-windows-ix86+x86_64 1.5 4.00 41.00 45.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5 3.00 45.00 48.00 NOTE

Check Details

Version: 1.5
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘RColorBrewer’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘MKmisc’
Flavor: r-devel-osx-x86_64-gcc

Version: 1.5
Check: examples
Result: ERROR
    Running examples in ‘RFLPtools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: RFLPtools-package
    > ### Title: Tools to analyse RFLP-data
    > ### Aliases: RFLPtools-package RFLPtools
    > ### Keywords: package multivariate cluster
    >
    > ### ** Examples
    >
    > data(RFLPdata)
    > res <- RFLPdist(RFLPdata)
    > plot(hclust(res[[1]]), main = "Euclidean distance")
    >
    > par(mfrow = c(1,2))
    > plot(hclust(RFLPdist(RFLPdata, nrBands = 3)), cex = 0.7)
    > RFLPplot(RFLPdata, nrBands = 3, mar.bottom = 6, cex.axis = 0.8)
    >
    > data(RFLPref)
    > RFLPrefplot(RFLPdata, RFLPref, nrBands = 6, cex.axis = 0.8)
    >
    >
    > library(MKmisc)
    Error in library(MKmisc) : there is no package called ‘MKmisc’
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 1.5
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    5c929ab/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: RColorBrewer
    20 bands were removed.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'RFLPtools.tex' failed.
    Messages:
    /usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
    /usr/bin/texi2dvi: see RFLPtools.log for errors.
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard