CRAN Package Check Results for Package RFLPtools

Last updated on 2015-07-28 19:48:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6 0.79 25.57 26.36 NOTE
r-devel-linux-x86_64-debian-gcc 1.6 0.82 24.64 25.46 NOTE
r-devel-linux-x86_64-fedora-clang 1.6 50.82 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6 48.44 NOTE
r-devel-osx-x86_64-clang 1.6 48.52 OK
r-devel-windows-ix86+x86_64 1.6 4.00 40.00 44.00 NOTE
r-patched-linux-x86_64 1.6 0.80 25.31 26.11 OK
r-patched-solaris-sparc 1.6 299.90 OK
r-patched-solaris-x86 1.6 65.40 OK
r-release-linux-x86_64 1.6 0.84 25.16 26.00 OK
r-release-osx-x86_64-mavericks 1.6 OK
r-release-windows-ix86+x86_64 1.6 6.00 43.00 49.00 OK
r-oldrel-windows-ix86+x86_64 1.6 5.00 45.00 50.00 OK

Check Details

Version: 1.6
Check: R code for possible problems
Result: NOTE
    RFLPdist: no visible binding for global variable ‘dist’
    RFLPdist2: no visible binding for global variable ‘dist’
    RFLPdist2 : dfun1: no visible global function definition for ‘combn’
    RFLPdist2 : dfun2: no visible global function definition for ‘combn’
    RFLPdist2ref: no visible binding for global variable ‘dist’
    RFLPplot: no visible binding for global variable ‘dist’
    RFLPplot: no visible global function definition for ‘order.dendrogram’
    RFLPplot: no visible global function definition for ‘as.dendrogram’
    RFLPplot: no visible global function definition for ‘hclust’
    RFLPplot: no visible global function definition for ‘par’
    RFLPplot: no visible global function definition for ‘plot’
    RFLPplot: no visible global function definition for ‘axis’
    RFLPplot: no visible global function definition for ‘abline’
    RFLPplot: no visible global function definition for ‘box’
    RFLPplot: no visible global function definition for ‘title’
    RFLPplot: no visible global function definition for ‘colorRampPalette’
    RFLPplot: no visible global function definition for ‘matlines’
    RFLPrefplot: no visible binding for global variable ‘dist’
    RFLPrefplot: no visible global function definition for ‘par’
    RFLPrefplot: no visible global function definition for ‘dev.new’
    RFLPrefplot: no visible global function definition for ‘plot’
    RFLPrefplot: no visible global function definition for ‘axis’
    RFLPrefplot: no visible global function definition for ‘abline’
    RFLPrefplot: no visible global function definition for ‘box’
    RFLPrefplot: no visible global function definition for ‘title’
    RFLPrefplot: no visible global function definition for
     ‘colorRampPalette’
    RFLPrefplot: no visible global function definition for ‘matlines’
    diffDist: no visible global function definition for ‘dist’
    read.blast: no visible global function definition for ‘read.table’
    read.rflp: no visible global function definition for ‘read.delim’
    read.rflp : <anonymous>: no visible global function definition for
     ‘tail’
    sim2dist: no visible global function definition for ‘as.dist’
    simulateRFLPdata: no visible global function definition for ‘runif’
    write.hclust: no visible global function definition for ‘cutree’
    write.hclust: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline as.dendrogram as.dist axis box colorRampPalette combn cutree
     dev.new dist hclust matlines order.dendrogram par plot read.delim
     read.table runif tail title write.table
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.new")
     importFrom("graphics", "abline", "axis", "box", "matlines", "par",
     "plot", "title")
     importFrom("stats", "as.dendrogram", "as.dist", "cutree", "dist",
     "hclust", "order.dendrogram", "runif")
     importFrom("utils", "combn", "read.delim", "read.table", "tail",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64