CRAN Package Check Results for Package RJaCGH

Last updated on 2014-07-30 08:48:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.2 3.70 60.15 63.85 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.2 6.97 59.82 66.79 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.2 138.57 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.2 136.83 NOTE
r-devel-osx-x86_64-clang 2.0.2 86.16 NOTE
r-devel-windows-ix86+x86_64 2.0.2 27.00 160.00 187.00 NOTE
r-patched-linux-x86_64 2.0.2 7.17 57.35 64.52 NOTE
r-patched-solaris-sparc 2.0.2 744.10 NOTE
r-patched-solaris-x86 2.0.2 190.30 NOTE
r-release-linux-ix86 2.0.2 8.51 80.87 89.38 NOTE
r-release-linux-x86_64 2.0.2 8.34 57.76 66.11 NOTE
r-release-osx-x86_64-mavericks 2.0.2 NOTE
r-release-windows-ix86+x86_64 2.0.2 36.00 170.00 206.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0.2 26.00 163.00 189.00 NOTE

Memtest notes: valgrind

Check Details

Version: 2.0.2
Check: R code for possible problems
Result: NOTE
    genomePlot: warning in layout(rbind(c(1, 2), c(3, 3)), width = c(1, 1),
     height = c(9, 2.5)): partial argument match of 'width' to 'widths'
    genomePlot: warning in layout(rbind(c(1, 2), c(3, 3)), width = c(1, 1),
     height = c(9, 2.5)): partial argument match of 'height' to 'heights'
    plot.pREC_S: warning in layout(matrix(c(1, 2), 1, 2), width = c(1, 7)):
     partial argument match of 'width' to 'widths'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.2
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.Q.NH':
     plot.Q.NH
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter Writing R documentation files in the Writing R
    Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.2
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     README.RJaCGH README.zlib README.zlib.in.RJaCGH
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0.2
Check: Rd line widths
Result: NOTE
    Rd file 'plot.RJaCGH.Rd':
     \examples lines wider than 100 characters:
     fit.Genom <- RJaCGH(y=y, Pos=Pos, Chrom=Chrom, model="Genome", burnin=100, TOT=1000, jump.parameters=jp, k.max=4)
     fit.Genom.array <- RJaCGH(y=ya, Pos=Pos, Chrom=Chrom, model="Genome", burnin=100, TOT=1000, jump.parameters=jp, k.max=4)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc