CRAN Package Check Results for Package RJaCGH

Last updated on 2014-10-24 14:47:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.2 4.42 73.71 78.13 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.2 7.00 72.72 79.72 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.2 144.99 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.2 135.19 NOTE
r-devel-osx-x86_64-clang 2.0.2 88.26 NOTE
r-devel-windows-ix86+x86_64 2.0.2 26.00 169.00 195.00 NOTE
r-patched-linux-x86_64 2.0.2 7.07 81.38 88.45 NOTE
r-patched-solaris-sparc 2.0.2 752.50 NOTE
r-patched-solaris-x86 2.0.2 170.30 NOTE
r-release-linux-ix86 2.0.2 8.07 81.28 89.35 NOTE
r-release-linux-x86_64 2.0.2 7.06 70.84 77.90 NOTE
r-release-osx-x86_64-mavericks 2.0.2 NOTE
r-release-windows-ix86+x86_64 2.0.2 36.00 170.00 206.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0.2 26.00 163.00 189.00 NOTE

Memtest notes: valgrind

Check Details

Version: 2.0.2
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘README.RJaCGH’ ‘README.zlib’ ‘README.zlib.in.RJaCGH’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0.2
Check: R code for possible problems
Result: NOTE
    genomePlot: warning in layout(rbind(c(1, 2), c(3, 3)), width = c(1, 1),
     height = c(9, 2.5)): partial argument match of ‘width’ to ‘widths’
    genomePlot: warning in layout(rbind(c(1, 2), c(3, 3)), width = c(1, 1),
     height = c(9, 2.5)): partial argument match of ‘height’ to ‘heights’
    plot.pREC_S: warning in layout(matrix(c(1, 2), 1, 2), width = c(1, 7)):
     partial argument match of ‘width’ to ‘widths’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.2
Check: Rd line widths
Result: NOTE
    Rd file 'plot.RJaCGH.Rd':
     \examples lines wider than 100 characters:
     fit.Genom <- RJaCGH(y=y, Pos=Pos, Chrom=Chrom, model="Genome", burnin=100, TOT=1000, jump.parameters=jp, k.max=4)
     fit.Genom.array <- RJaCGH(y=ya, Pos=Pos, Chrom=Chrom, model="Genome", burnin=100, TOT=1000, jump.parameters=jp, k.max=4)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0.2
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.Q.NH':
     ‘plot.Q.NH’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64