CRAN Package Check Results for Package RMark

Last updated on 2014-04-25 05:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.7 5.90 70.12 76.02 OK --install=fake
r-devel-linux-x86_64-debian-gcc 2.1.7 5.85 73.59 79.44 OK --install=fake
r-devel-linux-x86_64-fedora-clang 2.1.7 157.39 OK --install=fake
r-devel-linux-x86_64-fedora-gcc 2.1.7 151.50 OK --install=fake
r-devel-osx-x86_64-gcc 2.1.7 ERROR
r-devel-windows-ix86+x86_64 2.1.7 12.00 102.00 114.00 OK
r-patched-linux-x86_64 2.1.7 5.77 73.24 79.01 OK --install=fake
r-release-linux-ix86 2.1.7 9.00 112.00 121.00 OK --install=fake
r-release-linux-x86_64 2.1.7 5.85 73.49 79.34 OK --install=fake
r-release-osx-x86_64-mavericks 2.1.7 ERROR
r-release-osx-x86_64-snowleopard 2.1.7 ERROR
r-release-windows-ix86+x86_64 2.1.7 15.00 110.00 125.00 OK
r-oldrel-windows-ix86+x86_64 2.1.7 13.00 98.00 111.00 OK

Check Details

Version: 2.1.7
Check: whether package can be installed
Result: WARNING
    Found the following significant warnings:
     Warning: Software mark not found in path.
    See ‘/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.2/RMark.Rcheck/00install.out’ for details.
Flavor: r-devel-osx-x86_64-gcc

Version: 2.1.7
Check: examples
Result: ERROR
    Running examples in ‘RMark-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Blackduck
    > ### Title: Black duck known fate data
    > ### Aliases: Blackduck
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(Blackduck)
    > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are
    > # no longer allowed. They can work as in this example but they can be misleading
    > # and fail if the levels are non-numeric. The real parameters will remain
    > # unchanged but the betas will be different.
    > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1
    > run.Blackduck=function()
    + {
    + #
    + # Process data
    + #
    + bduck.processed=process.data(Blackduck,model="Known")
    + #
    + # Create default design data
    + #
    + bduck.ddl=make.design.data(bduck.processed)
    + #
    + # Add occasion specific data min < 0; I have no idea what it is
    + #
    + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5)
    + #
    + # Define range of models for S
    + #
    + S.dot=list(formula=~1)
    + S.time=list(formula=~time)
    + S.min=list(formula=~min)
    + S.BirdAge=list(formula=~BirdAge)
    + #
    + # Note that in the following model in the MARK example, the covariates
    + # have been standardized. That means that the beta parameters will be different
    + # for BirdAge, Weight and their interaction but the likelihood and real parameter
    + # estimates are the same.
    + #
    + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight)
    + S.BirdAge.Weight=list(formula=~BirdAge+Weight)
    + #
    + # Create model list and run assortment of models
    + #
    + model.list=create.model.list("Known")
    + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl,
    + invisible=FALSE,threads=2)
    +
    + #
    + # Return model table and list of models
    + #
    + return(bduck.results)
    + }
    > bduck.results=run.Blackduck()
    
     S.BirdAge
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~BirdAge) **********
    
    
     S.BirdAge.Weight
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~BirdAge + Weight) **********
    
    
     S.BirdAgexWeight.min
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~min + BirdAge * Weight) **********
    
    
     S.dot
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~1) **********
    
    
     S.min
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~min) **********
    
    
     S.time
    sh: mark: command not found
    Warning in file(con, "r") :
     cannot open file 'mark001.out': No such file or directory
    Error in file(con, "r") : cannot open the connection
    
    
    ********Following model failed to run : S(~time) **********
    
    Model 1: S.BirdAge has not been run.
    Model 2: S.BirdAge.Weight has not been run.
    Model 3: S.BirdAgexWeight.min has not been run.
    Model 4: S.dot has not been run.
    Model 5: S.min has not been run.
    Model 6: S.time has not been run.
    Warning in min(result.table$AICc) :
     no non-missing arguments to min; returning Inf
    Error in result.table[order(result.table$DeltaAICc), ] :
     incorrect number of dimensions
    Calls: run.Blackduck -> mark.wrapper -> collect.models -> model.table
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.1.7
Check: whether package can be installed
Result: WARNING
    Found the following significant warnings:
     Warning: Software mark not found in path.
    See ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/RMark.Rcheck/00install.out’ for details.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.1.7
Check: whether package can be installed
Result: WARNING
    Found the following significant warnings:
     Warning: Software mark not found in path.
    See ‘/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/RMark.Rcheck/00install.out’ for details.
Flavor: r-release-osx-x86_64-snowleopard