CRAN Package Check Results for Package RNiftyReg

Last updated on 2015-07-04 16:46:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 29.17 19.24 48.42 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.3 41.05 18.87 59.92 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.3 108.00 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.3 114.92 NOTE
r-devel-osx-x86_64-clang 1.1.3 67.67 NOTE
r-devel-windows-ix86+x86_64 1.1.3 201.00 76.00 277.00 NOTE
r-patched-linux-x86_64 1.1.3 40.20 18.88 59.09 NOTE
r-patched-solaris-sparc 1.1.3 806.70 OK
r-patched-solaris-x86 1.1.3 393.70 OK
r-release-linux-x86_64 1.1.3 41.02 19.37 60.39 NOTE
r-release-osx-x86_64-mavericks 1.1.3 NOTE
r-release-windows-ix86+x86_64 1.1.3 201.00 50.00 251.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.3 199.00 94.00 293.00 NOTE

Check Details

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    .createControlPointImage: no visible global function definition for
     ‘new’
    .fixTypes: no visible global function definition for ‘slot<-’
    .fixTypes: no visible global function definition for ‘slot’
    getDeformationField: no visible global function definition for ‘as’
    niftyreg.linear: no visible global function definition for ‘as’
    niftyreg.nonlinear: no visible global function definition for ‘as’
    niftyreg.nonlinear : <anonymous>: no visible global function definition
     for ‘as’
    readAffine: no visible global function definition for ‘read.table’
    transformVoxelToWorld: no visible global function definition for ‘as’
    transformWithControlPoints: no visible global function definition for
     ‘as’
    transformWithControlPoints : <anonymous>: no visible global function
     definition for ‘lm’
    transformWithControlPoints : <anonymous>: no visible global function
     definition for ‘predict’
    transformWorldToVoxel: no visible global function definition for ‘as’
    xformToAffine: no visible global function definition for ‘as’
    Undefined global functions or variables:
     as lm new predict read.table slot slot<-
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1.3
Check: compiled code
Result: NOTE
    File ‘RNiftyReg/libs/RNiftyReg.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Objects: ‘niftyreg.o’, ‘print.o’, ‘_reg_blockMatching.o’,
     ‘_reg_KLdivergence.o’, ‘_reg_globalTransformation.o’,
     ‘_reg_localTransformation.o’, ‘_reg_maths.o’,
     ‘_reg_mutualinformation.o’, ‘_reg_ssd.o’, ‘_reg_tools.o’,
     ‘nifti1_io.o’, ‘znzlib.o’
     Found ‘stdout’, possibly from ‘stdout’ (C)
     Objects: ‘print.o’, ‘nifti1_io.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: installed package size
Result: NOTE
     installed size is 6.4Mb
     sub-directories of 1Mb or more:
     libs 5.9Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.3
Check: compiled code
Result: NOTE
    File ‘RNiftyReg/libs/RNiftyReg.so’:
     Found ‘___stderrp’, possibly from ‘stderr’ (C)
     Objects: ‘niftyreg.o’, ‘print.o’, ‘_reg_blockMatching.o’,
     ‘_reg_KLdivergence.o’, ‘_reg_globalTransformation.o’,
     ‘_reg_localTransformation.o’, ‘_reg_maths.o’,
     ‘_reg_mutualinformation.o’, ‘_reg_ssd.o’, ‘_reg_tools.o’,
     ‘nifti1_io.o’, ‘znzlib.o’
     Found ‘___stdoutp’, possibly from ‘stdout’ (C)
     Objects: ‘print.o’, ‘nifti1_io.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks