CRAN Package Check Results for Package RPPanalyzer

Last updated on 2016-02-09 16:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.4.1 5.15 108.38 113.54 NOTE
r-devel-linux-x86_64-fedora-clang 1.4.1 223.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.1 214.12 NOTE
r-devel-osx-x86_64-clang 1.4.1 222.88 NOTE
r-devel-windows-ix86+x86_64 1.4.1 24.00 167.00 191.00 NOTE
r-patched-linux-x86_64 1.4.1 5.85 112.00 117.85 NOTE
r-patched-solaris-sparc 1.4.1 1413.20 NOTE
r-patched-solaris-x86 1.4.1 282.40 NOTE
r-release-linux-x86_64 1.4.1 6.10 114.00 120.10 WARN
r-release-osx-x86_64-mavericks 1.4.1 NOTE
r-release-windows-ix86+x86_64 1.4.1 24.00 178.00 202.00 NOTE
r-oldrel-windows-ix86+x86_64 1.4.1 40.00 274.00 314.00 WARN

Check Details

Version: 1.4.1
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     extdata 4.5Mb
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.1
Check: R code for possible problems
Result: NOTE
    analyzeIntercepts: no visible global function definition for ‘lm’
    analyzeIntercepts: no visible global function definition for ‘anova’
    analyzeIntercepts: no visible global function definition for ‘pdf’
    analyzeIntercepts: no visible global function definition for ‘barplot’
    analyzeIntercepts: no visible global function definition for ‘dev.off’
    annotate.samples: no visible global function definition for ‘head’
    averageData: no visible binding for global variable ‘time’
    averageData: no visible global function definition for ‘var’
    averageData: no visible global function definition for ‘nls’
    correctBG: no visible global function definition for ‘new’
    curveFitLinear: no visible global function definition for ‘aggregate’
    curveFitLinear : <anonymous>: no visible global function definition for
     ‘quantile’
    curveFitLinear : <anonymous>: no visible global function definition for
     ‘median’
    curveFitLinear: no visible global function definition for ‘lm’
    curveFitLinear: no visible global function definition for ‘median’
    curveFitLinear: no visible global function definition for ‘abline’
    curveFitLinear: no visible global function definition for ‘lines’
    curveFitSigmoid: no visible global function definition for ‘aggregate’
    curveFitSigmoid : <anonymous>: no visible global function definition
     for ‘quantile’
    curveFitSigmoid : <anonymous>: no visible global function definition
     for ‘median’
    curveFitSigmoid: no visible global function definition for ‘median’
    curveFitSigmoid: no visible global function definition for ‘abline’
    curveFitSigmoid: no visible global function definition for ‘lines’
    dataPreproc: no visible global function definition for ‘read.delim’
    dataPreproc: no visible global function definition for ‘write.table’
    get.Splines: no visible global function definition for ‘anova’
    getErrorModel: no visible global function definition for ‘pdf’
    getErrorModel : <anonymous>: no visible global function definition for
     ‘var’
    getErrorModel: no visible global function definition for ‘matplot’
    getErrorModel: no visible global function definition for ‘title’
    getErrorModel: no visible global function definition for ‘dev.off’
    getIntercepts: no visible global function definition for ‘pdf’
    getIntercepts: no visible global function definition for
     ‘smooth.spline’
    getIntercepts: no visible global function definition for ‘predict’
    getIntercepts: no visible global function definition for ‘sd’
    getIntercepts: no visible global function definition for ‘matplot’
    getIntercepts: no visible global function definition for ‘arrows’
    getIntercepts: no visible global function definition for ‘title’
    getIntercepts: no visible global function definition for ‘dev.off’
    getSignals: no visible global function definition for ‘predict’
    median.raw: no visible binding for global variable ‘median’
    median.raw: no visible binding for global variable ‘mad’
    norm.BCA: no visible global function definition for ‘median’
    norm.static.I: no visible global function definition for ‘median’
    norm.static.II: no visible global function definition for ‘median’
    norm.texas: no visible binding for global variable ‘median’
    norm.texas: no visible global function definition for ‘median’
    plotDilutionSeries: no visible global function definition for ‘abline’
    plotDilutionSeries: no visible global function definition for ‘points’
    plotDilutionSeries: no visible global function definition for ‘median’
    plotDilutionSeries: no visible global function definition for ‘mad’
    plotDilutionSeries: no visible global function definition for ‘nls’
    plotHeatmap: no visible global function definition for ‘dist’
    plotHeatmap: no visible global function definition for ‘as.dist’
    plotHeatmap: no visible global function definition for ‘cor’
    plotHeatmap: no visible global function definition for ‘as.dendrogram’
    plotHeatmap: no visible global function definition for ‘hclust’
    plotHeatmap: no visible global function definition for ‘quantile’
    plotHeatmap: no visible global function definition for ‘pdf’
    plotHeatmap: no visible global function definition for ‘dev.off’
    plotMeasurementsQC: no visible global function definition for ‘pdf’
    plotMeasurementsQC: no visible global function definition for ‘par’
    plotMeasurementsQC: no visible global function definition for ‘abline’
    plotMeasurementsQC: no visible global function definition for ‘dev.off’
    plotQC: no visible global function definition for ‘pdf’
    plotQC: no visible global function definition for ‘par’
    plotQC: no visible global function definition for ‘points’
    plotQC: no visible global function definition for ‘legend’
    plotQC: no visible global function definition for ‘dev.off’
    plotTimeCourse: no visible global function definition for ‘pdf’
    plotTimeCourse: no visible global function definition for ‘rainbow’
    plotTimeCourse: no visible global function definition for ‘median’
    plotTimeCourse: no visible global function definition for ‘par’
    plotTimeCourse: no visible global function definition for ‘sd’
    plotTimeCourse: no visible global function definition for ‘lines’
    plotTimeCourse: no visible global function definition for ‘predict’
    plotTimeCourse: no visible global function definition for ‘polygon’
    plotTimeCourse: no visible global function definition for ‘legend’
    plotTimeCourse: no visible global function definition for ‘dev.off’
    plotTimeCourseII: no visible binding for global variable ‘time’
    plotTimeCourseII: no visible global function definition for ‘pdf’
    plotTimeCourseII: no visible global function definition for ‘dev.off’
    plotqq: no visible global function definition for ‘pdf’
    plotqq: no visible global function definition for ‘par’
    plotqq: no visible global function definition for ‘qqnorm’
    plotqq: no visible global function definition for ‘qqline’
    plotqq: no visible global function definition for ‘dev.off’
    protein.con: no visible global function definition for ‘median’
    protein.con: no visible global function definition for ‘mad’
    read.Data: no visible global function definition for ‘write.csv’
    read.gpr: no visible global function definition for ‘read.delim’
    read.sampledescription: no visible global function definition for
     ‘read.delim’
    read.slidedescription: no visible global function definition for
     ‘read.delim’
    rppa2boxplot: no visible global function definition for ‘wilcox.test’
    rppa2boxplot: no visible global function definition for ‘p.adjust’
    rppa2boxplot: no visible global function definition for ‘pdf’
    rppa2boxplot: no visible global function definition for ‘par’
    rppa2boxplot: no visible global function definition for ‘boxplot’
    rppa2boxplot: no visible global function definition for ‘stripchart’
    rppa2boxplot: no visible global function definition for ‘text’
    rppa2boxplot: no visible global function definition for ‘dev.off’
    rppa2boxplot: no visible global function definition for ‘kruskal.test’
    rppaList2ExpressionSet: no visible global function definition for ‘new’
    rppaList2Heatmap: no visible global function definition for
     ‘colorRampPalette’
    rppaList2Heatmap: no visible global function definition for ‘pdf’
    rppaList2Heatmap: no visible global function definition for ‘legend’
    rppaList2Heatmap: no visible global function definition for ‘dev.off’
    sample.median: no visible binding for global variable ‘median’
    sample.median: no visible binding for global variable ‘mad’
    simpleBoxplot: no visible global function definition for ‘pdf’
    simpleBoxplot: no visible global function definition for ‘boxplot’
    simpleBoxplot: no visible global function definition for ‘stripchart’
    simpleBoxplot: no visible global function definition for ‘dev.off’
    spotbyspot: no visible global function definition for ‘median’
    test.correlation: no visible global function definition for ‘cor.test’
    test.correlation: no visible global function definition for ‘p.adjust’
    test.correlation: no visible global function definition for ‘pdf’
    test.correlation: no visible global function definition for ‘par’
    test.correlation: no visible global function definition for ‘lm’
    test.correlation: no visible global function definition for ‘abline’
    test.correlation: no visible global function definition for ‘dev.off’
    write.Data: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline aggregate anova arrows as.dendrogram as.dist barplot boxplot
     colorRampPalette cor cor.test dev.off dist hclust head kruskal.test
     legend lines lm mad matplot median new nls p.adjust par pdf points
     polygon predict qqline qqnorm quantile rainbow read.delim sd
     smooth.spline stripchart text time title var wilcox.test write.csv
     write.table
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.off", "pdf",
     "rainbow")
     importFrom("graphics", "abline", "arrows", "barplot", "boxplot",
     "legend", "lines", "matplot", "par", "points", "polygon",
     "stripchart", "text", "title")
     importFrom("methods", "new")
     importFrom("stats", "aggregate", "anova", "as.dendrogram", "as.dist",
     "cor", "cor.test", "dist", "hclust", "kruskal.test", "lm",
     "mad", "median", "nls", "p.adjust", "predict", "qqline",
     "qqnorm", "quantile", "sd", "smooth.spline", "time", "var",
     "wilcox.test")
     importFrom("utils", "head", "read.delim", "write.csv", "write.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.4.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import by ‘ggplot2::unit’ when loading ‘RPPanalyzer’
     Warning: replacing previous import by ‘ggplot2::arrow’ when loading ‘RPPanalyzer’
Flavor: r-release-linux-x86_64

Version: 1.4.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: replacing previous import by 'ggplot2::arrow' when loading 'RPPanalyzer'
     Warning: replacing previous import by 'ggplot2::unit' when loading 'RPPanalyzer'
Flavor: r-oldrel-windows-ix86+x86_64